Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0039 ATGCAGTCCACAACTGGTGCTGGTGCTACTGGTAGTCGTAGCTCCGGCGGCGGTACCGGCGGTGGCCTCGCTCGCTTCCGCTCTGCCCCTGCCGCCTGGTTGGAAGCGCTTTTGGAGGACGACGAGGAGGACCCTCTCAAGCCCAATCACTGCTTGACTCAGCTTCTCGCCGCCGACTCCTCCGACCTCGACTCTCCCGCTGATCAGCCCTTGTTCGACCCCAATCCCTCCCCGGCCTTCCACAGACAGAATAGCTCTCCCGCCGAGTTTCTCGCCGCCTCTGGAATTGGGGAAGGATTTTACACTGCCTATGCTCTCAATTCCTCCCCCACTCTTGACATCTCTCCCACCTCCAAGCGAGCTAGAGAAGTCGACCCCCAAAACTTCTCCCCCAAATTTTCACCTCAACTGAAAAGGGAAGGAAGTGGAGTTTCCAGTTTAATAGACATGGAAATGGAGAAGTTATTGGAGGACTCTGTGCCCTGCCGGGTAAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCGGAGAGGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGCAAACAAACACTGCAGATATGTTAGAAGAAGCAGTAGAGTATGTCAAATTCCTTCAAAAGCAAATTCAGGAACTCACGGAGCATCAGCGCAGGTGCAAATGCATGGTGAAGGAATGA 723 54.22 MQSTTGAGATGSRSSGGGTGGGLARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLAADSSDLDSPADQPLFDPNPSPAFHRQNSSPAEFLAASGIGEGFYTAYALNSSPTLDISPTSKRAREVDPQNFSPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKFLQKQIQELTEHQRRCKCMVKE 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 916345 920237 + CmPI595203_08g000390.1 Cmu08g0039 421525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0039 240 FunFam Transcription factor bHLH130 family 171 239 - -
Cmu08g0039 240 CDD bHLH_AtbHLH_like 175 227 IPR045239 -
Cmu08g0039 240 Coils Coil 210 230 - -
Cmu08g0039 240 Gene3D - 171 240 IPR036638 GO:0046983(InterPro)
Cmu08g0039 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 220 IPR011598 GO:0046983(InterPro)
Cmu08g0039 240 Pfam Helix-loop-helix DNA-binding domain 176 221 IPR011598 GO:0046983(InterPro)
Cmu08g0039 240 MobiDBLite consensus disorder prediction 116 141 - -
Cmu08g0039 240 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 47 233 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cmu08g0039 240 MobiDBLite consensus disorder prediction 1 17 - -
Cmu08g0039 240 MobiDBLite consensus disorder prediction 57 76 - -
Cmu08g0039 240 SMART finulus 176 226 IPR011598 GO:0046983(InterPro)
Cmu08g0039 240 MobiDBLite consensus disorder prediction 1 25 - -
Cmu08g0039 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 237 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0039 Cmu-Chr8:916345 Cmu10g2467 Cmu-Chr10:31287112 2.40E-28 dispersed
Cmu08g0039 Cmu-Chr8:916345 Cmu07g1641 Cmu-Chr7:31708953 4.20E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6608 PF00010 HLH 2.90E-10 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0039 - - - 0.0