Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0056 ATGGGGAGAGGAAAGATTGAAATAAAGAGAATAGAAAACACAACAAATCGACAAGTGACATTCTGCAAGAGAAGAAATGGACTTTTGAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAATACTCCAATAACAGTATCAAAACTACTATTGAGAGGTACAAGAACTCTTGTTCTGATAGCTCAGCTACCAGCTCTGTCACTGAACTAAATACTCAATATTATCAGCAAGAATCGGCTAAGCTGCGTCAACAAATACAAATGCTTCAGAATTCCAACAGCAATCTTGTTAGGCACTTGATGGGGGACTCCTTGAGTGCTCTTACAGTCAAAGAACTAAAGCAGCTTGAAAATAGGCTTGAAAGGGGCATCACTAGAATCAGATCAAAGAAGCATGAAATGTTGCTAGCAGAAATTGAGTATCTTCAAAAAAGGGAGATTGAGCTGGAGAATGAAAATGTGTGTATTAGAACCAAGATAGCTGAAGTTGAGAGGCTCCAACAAGCAAACATGGTATCTGGACAAGAACTGAATGCAATTCAGGCATTGGCTTCTCGTAATTTCTTCTCTCCTAATATGATGGAAGGTGGAGCTGTTACTTACTCTCATCAAGACAAGAAGATGCTTCATATTGGGTGA 684 39.91 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSIKTTIERYKNSCSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNSNLVRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERLQQANMVSGQELNAIQALASRNFFSPNMMEGGAVTYSHQDKKMLHIG 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1266397 1274649 - CmPI595203_08g000560.1 Cmu08g0056 421542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0056 227 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu08g0056 227 ProSiteProfiles K-box domain profile. 87 181 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu08g0056 227 Pfam K-box region 86 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu08g0056 227 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Cmu08g0056 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu08g0056 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu08g0056 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu08g0056 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 190 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu08g0056 227 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu08g0056 227 Coils Coil 128 167 - -
Cmu08g0056 227 CDD MADS_MEF2_like 2 71 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cmu08g0056 227 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu08g0056 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu08g0056 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu08g0056 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2353 Cmu-Chr1:35604554 Cmu08g0056 Cmu-Chr8:1266397 6.50E-69 dispersed
Cmu02g1825 Cmu-Chr2:32161779 Cmu08g0056 Cmu-Chr8:1266397 3.10E-64 dispersed
Cmu03g1323 Cmu-Chr3:8362806 Cmu08g0056 Cmu-Chr8:1266397 2.90E-69 dispersed
Cmu08g0056 Cmu-Chr8:1266397 Cmu08g0995 Cmu-Chr8:22191298 4.20E-35 dispersed
Cmu08g0056 Cmu-Chr8:1266397 Cmu08g0062 Cmu-Chr8:1350912 7.50E-24 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6610 PF01486 K-box 1.60E-23 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0056 K09264 - csv:101208072 399.823