Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0062 ATGGCTCGTGGGAAGGTTCAAATGAAGAGGATTGAGAATCCAGTGCATAGACAAGTTACTTTCTGTAAGCGTCGAGCTGGTCTCCTTAAGAAGGCTAAGGAGCTCTCTGTCCTTTGCGATGCTCAAATTGGAGTTTTCATTTTCTCTGCTCATGGAAAGCTCTATGAACTTGCCACTAAAGGAACCATGCAAGGGCTCATTGAAAGGTACATGAAGCACACCAATGGGAATCAGCCACCAGACCCACCTATTGATCACCAAACTCTGGAAGTAAAGGATGAGGTCATCAGGCTGAAGCAAGAAATTGAAGTTCTAAAGGGTCTCAGGAATGCTTTGGGAGGAGGAGGAAGCGAAGGAATAATGACATTGGATGAGCTTGATATGTTTGAGAAACAACTTGAGATTTGGATTTGTCAAGTGCGTACTACAAAGATGAAGTTCATGTGTGAAGAGATTGAAGCACTGAGGAACCAGGAATTGATACTGAAAGCTGCCAACAACAAGTATCTTCATGATAAGATGGATGAAAACATTAGCAACACAACTAACATTGAACCTGTGAATATTACTAACTGTCAATATCCACTAACTATACAGGATGAGTTATTTCAGCTTTGCACTTAA 624 41.35 MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAQIGVFIFSAHGKLYELATKGTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVLKGLRNALGGGGSEGIMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANNKYLHDKMDENISNTTNIEPVNITNCQYPLTIQDELFQLCT 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1350912 1354268 - CmPI595203_08g000620.1 Cmu08g0062 421548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0062 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 180 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu08g0062 207 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu08g0062 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu08g0062 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu08g0062 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu08g0062 207 Pfam K-box region 88 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu08g0062 207 ProSiteProfiles K-box domain profile. 88 180 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu08g0062 207 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cmu08g0062 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu08g0062 207 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu08g0062 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu08g0062 207 Gene3D - 15 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0062 Cmu-Chr8:1350912 Cmu08g0995 Cmu-Chr8:22191298 6.40E-30 dispersed
Cmu08g0056 Cmu-Chr8:1266397 Cmu08g0062 Cmu-Chr8:1350912 7.50E-24 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6611 PF01486 K-box 5.20E-15 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0062 - - - 0.0