Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0078 ATGGGCTGCATGTGCTCAAGAGATTCCTCAGAACCAGAGGATAGCGATCACAAAGAGTCTGAAAAAGATTTGAACAAATCTTCAGTCCAGTTGGTTGCCCCTTCTCCCTCAAAAAGAGAGGATATGCTGTTAGAGATTCAGTTGTCAAGGCAGGCATCTAAACCAAATGGGGGTTCTGTTCATAAAGCAAAGGCCAATGGAGGTTCTGTCCATCGAGCAAAGGAGGATGATGAATCTGAGAATAAATCCATAAAGGCTGCAAAACCAAATAATGATAATGCTTCAGGAGGTGGAAAGCAGCCTGAGATTTTTCGGTTAGCTAGCTTGTCTAAAGGGGCTGAAGCTGAACTTGTCATGGCTGGATGGCCTTCATGGTTAGCTTCCGTTGCTGGAGAAGCCATCAAAGGGTGGGTGCCTCGCCGGGCTGACTCCTTTGAAAAGTTAGACAAAATTGGACAGGGAACTTACAGCAGTGTATATAAAGCCCGTGACCTTGAAACATGTAAAATTGTGGCATTGAAAAAAGTAAGATTTGTAAATATGGATCCCGAAAGTGTCCGTTTTATGGCTAGGGAAATCTATATTTTGCGCAAACTTGATCATCCAAATGTTATGAAGCTTGAGGGTCTAGTCACTTCCAGAATGTCGGGCAGCTTGTACCTTGTTTTTGAGTACATGGAGCATGACCTTGCTGGCCTTGCAGCAGCTCCTGGACATAAGTTTACGGAGGCTCAGATTAAATGTTATGTGCAACAATTGCTGCATGGACTTGAGCACTGTCATAGTCGAGGAATTCTGCACCGGGATATCAAAGGTTCAAATCTTCTTGTTGACAATAATGGTGTGCTTAAGATTGGAGACTTTGGTCTTGCTACCTTTTTTCAGCCTGATCAAAAGCAGCCATTGACAAGCCGGGTTGTGACGTTGTGGTACAGGGCACCTGAGCTTTTGCTTGGTGCTACCCAATATGGACCTGCCATAGATCTCTGGAGCTGTGGCTGTATCATTGCTGAGCTATTTGCTGGAAAACCTATTATGCCAGGAAGAACAGAGGTGGAACAAATGCACAAAATTTTTAAGCTCTGTGGTTCACCATCTGAGGAGTTCTGGCAGAGAACAAAGTTGCCACATGCAACCAGCTTCAAACCTCAACACCGTTATAAAAGCTGCCTTTCTGAGACATTTAAAAGTTTCCCTTCTTCAGCTCTGGCTCTTGTTAATAAGCTACTTGCTATTGAACCAGAGCACAGAGGATCAGCTACTTTAGCCCTCAGGAGTGAGTTTTTCAGAACAGAACCTCTCCCTTGTGACCCGTCAAGCTTACCAAAATATCCGCCGAGCAAAGAATTCGATGCCAAGCTGCGGAATGAAGAAGAAAAAAAGAAAAAGGCGGAAGCTGTGAAGGGACGCCATCCTGAATCGGTAAGAAGGGGCTCAAGAGACACCAAAGCAGTTCCTACTCCCGAATTCAATACTCAAGGAGATATTACTATGAAGGCACACCCAATCTCGAAAAAAATGAGTGTGAAATACAACCCTCAAGAAGACAGTGAGCCTCCAAGAGTTGCGCAAAATCGGTACAACCACTCAACTTCTATGGTGCACCCAAGCATTGTAGGTTTATGGGGTAAGCCTACCGAAGCCTTGAGAAATTGTGCAGAGTCAAAGACAAAGAAATCTCAGATGCATCAGTCAGTGGGAGATTTATCAACCTCTTCTCTGAAGAAGGAAGACTCGGTGTCTACTAAAGATTGTGGAATGGGTTATGTTCAAAAGAAGAACAGAATACACTACTCAGGACCATTGGTGCCTACAGGGGGAACCATTGAAGACATGCTGAAGGAGCACGAGAGACAAATCCAGCAGGCTTTTCGAAAGGCACGACTCGACAAAGCGAAGACAAACAAGAGTTATGGTGATCAGGTTTGA 1929 44.53 MGCMCSRDSSEPEDSDHKESEKDLNKSSVQLVAPSPSKREDMLLEIQLSRQASKPNGGSVHKAKANGGSVHRAKEDDESENKSIKAAKPNNDNASGGGKQPEIFRLASLSKGAEAELVMAGWPSWLASVAGEAIKGWVPRRADSFEKLDKIGQGTYSSVYKARDLETCKIVALKKVRFVNMDPESVRFMAREIYILRKLDHPNVMKLEGLVTSRMSGSLYLVFEYMEHDLAGLAAAPGHKFTEAQIKCYVQQLLHGLEHCHSRGILHRDIKGSNLLVDNNGVLKIGDFGLATFFQPDQKQPLTSRVVTLWYRAPELLLGATQYGPAIDLWSCGCIIAELFAGKPIMPGRTEVEQMHKIFKLCGSPSEEFWQRTKLPHATSFKPQHRYKSCLSETFKSFPSSALALVNKLLAIEPEHRGSATLALRSEFFRTEPLPCDPSSLPKYPPSKEFDAKLRNEEEKKKKAEAVKGRHPESVRRGSRDTKAVPTPEFNTQGDITMKAHPISKKMSVKYNPQEDSEPPRVAQNRYNHSTSMVHPSIVGLWGKPTEALRNCAESKTKKSQMHQSVGDLSTSSLKKEDSVSTKDCGMGYVQKKNRIHYSGPLVPTGGTIEDMLKEHERQIQQAFRKARLDKAKTNKSYGDQV 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1573914 1578072 - CmPI595203_08g000780.1 Cmu08g0078 421564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0078 642 ProSiteProfiles Protein kinase domain profile. 145 429 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g0078 642 MobiDBLite consensus disorder prediction 555 581 - -
Cmu08g0078 642 FunFam probable serine/threonine-protein kinase At1g54610 228 469 - -
Cmu08g0078 642 Pfam Protein kinase domain 145 429 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g0078 642 Coils Coil 447 467 - -
Cmu08g0078 642 MobiDBLite consensus disorder prediction 1 99 - -
Cmu08g0078 642 Gene3D Phosphorylase Kinase; domain 1 132 227 - -
Cmu08g0078 642 MobiDBLite consensus disorder prediction 9 25 - -
Cmu08g0078 642 SUPERFAMILY Protein kinase-like (PK-like) 138 437 IPR011009 -
Cmu08g0078 642 MobiDBLite consensus disorder prediction 68 85 - -
Cmu08g0078 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu08g0078 642 MobiDBLite consensus disorder prediction 458 483 - -
Cmu08g0078 642 Gene3D Transferase(Phosphotransferase) domain 1 228 469 - -
Cmu08g0078 642 PANTHER CELL DIVISION PROTEIN KINASE 144 429 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cmu08g0078 642 FunFam probable serine/threonine-protein kinase At1g54610 132 227 - -
Cmu08g0078 642 ProSitePatterns Protein kinases ATP-binding region signature. 151 174 IPR017441 GO:0005524(InterPro)
Cmu08g0078 642 Coils Coil 613 633 - -
Cmu08g0078 642 MobiDBLite consensus disorder prediction 558 576 - -
Cmu08g0078 642 CDD STKc_CDK9_like 145 429 - -
Cmu08g0078 642 SMART serkin_6 145 429 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g0078 642 MobiDBLite consensus disorder prediction 458 494 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0078 Cmu-Chr8:1573914 Cmu11g0057 Cmu-Chr11:1061686 7.00E-192 dispersed
Cmu08g0078 Cmu-Chr8:1573914 Cmu03g2235 Cmu-Chr3:30980116 3.40E-154 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75698 PF00069 Pkinase 1.60E-70 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0078 K08819 - csv:101208709 1201.81