Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0090 ATGCATTGTGAAAGCCAAATGAGGTGGTTCATATGGGGAGTTCTCTTCCTCCTAAGTGATCTTTCCTCTTCATCTTCTCCGGCACCGGCGGCTTTCGTCGGAGTTCAAGACGGCCATTTTCAGTTAAATGGTTCTCCATTTGTGTTCAATGGCTTTAACTCTTACTGGATGATGTCCGTCGCTGCTGACCCGAACCAACGCCACAAAGTCTCCGACGTCTTTCGAGATGCAGCCGCTGCCGCCCTCACAGTCTGCCGGACGTGGGCGTTTGCCGACGGCGGCTACCATGCCCTCCAAATCTCTCCCGGCGTTTATGATGAGAGAGTTTTTCAGGGTCTTGATTTTGTGATATGGGAAGCAAGAAAGTATGGAATTAGAATGATACTGAGTTTGGTGAATAATTACAAAGACTACGGCGGAAGAGCACAGTATGTACGGTGGGCCGAAGCTGCCGGCGATCAAATTCATAACGACGATGACTTCTATACTAATCAACTTATCAACACCTACTACAAAAACCATCTTCAGAAAGTGTTGAGAAGGAAGAATTCAATAAATGGTTTGAGATATATGGATGATCCGACCATTATGGGATGGGAACTTATGAATGAACCACGTTGTGAAGTTGATTCCTCAGGCAACACTATCAATAGATGGGTAGAAGAAATGGGAAGTTATGTGAAATCAATTGACAAAAAACATTTGGTGGGCATTGGAATGGAAGGATTCTATGGAGATTCAAGCCCAACCAAAATCAAATCCAACCCAAATAGTTACAAACTTGGCACTGATTTTATCGCCAACAATCTCAACAAATACATAGACTTTGCAACAATTCATGCATATCCTGATGCTTGGCTACCAGGGCAGAGTGAAGCCACCAAAATGGCATTCCTGGAGGAATGGATTACAACTCACTGGACAGACTCGAAGACTATCTTAAAGAAGCCATTGATTTTTGAAGAATTTGGAAAGTCAACCAAAGGCCAAAACCTAACATTCAGTGTAAGAGACAGAGATTTATTCCTGAGTAAGGTTTATTCAATCATCTACAACCTTGCAAGAAACGGAGCAACCATGGCTGGAGGTCTGGTCTGGCAAGTTATGGCTGAAGGAATGGAGTCGTATTACGATGGATATGAGATTGTTCTTTCCCAGAATCCTTCGACAAATTCCATTATTACACAACAGTCAAATAACATGGCTGCCCTTCATACTGTAAAACTCAACATTAAAACTCAACACCGCCTCAACAAAAGTAGATACTAA 1269 42.87 MHCESQMRWFIWGVLFLLSDLSSSSSPAPAAFVGVQDGHFQLNGSPFVFNGFNSYWMMSVAADPNQRHKVSDVFRDAAAAALTVCRTWAFADGGYHALQISPGVYDERVFQGLDFVIWEARKYGIRMILSLVNNYKDYGGRAQYVRWAEAAGDQIHNDDDFYTNQLINTYYKNHLQKVLRRKNSINGLRYMDDPTIMGWELMNEPRCEVDSSGNTINRWVEEMGSYVKSIDKKHLVGIGMEGFYGDSSPTKIKSNPNSYKLGTDFIANNLNKYIDFATIHAYPDAWLPGQSEATKMAFLEEWITTHWTDSKTILKKPLIFEEFGKSTKGQNLTFSVRDRDLFLSKVYSIIYNLARNGATMAGGLVWQVMAEGMESYYDGYEIVLSQNPSTNSIITQQSNNMAALHTVKLNIKTQHRLNKSRY 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1737567 1743851 - CmPI595203_08g000900.1 Cmu08g0090 421576

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0090 422 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 7 16 405 IPR045053 GO:0004553(InterPro)|GO:0016985(PANTHER)
Cmu08g0090 422 FunFam Mannan endo-1,4-beta-mannosidase 6 29 405 - -
Cmu08g0090 422 SUPERFAMILY (Trans)glycosidases 32 392 IPR017853 -
Cmu08g0090 422 Pfam Cellulase (glycosyl hydrolase family 5) 43 330 IPR001547 GO:0000272(InterPro)|GO:0004553(InterPro)
Cmu08g0090 422 Gene3D Glycosidases 29 405 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0090 K19355 - - csv:101206286 703.745
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1930 Cmu-Chr5:29188402 Cmu08g0090 Cmu-Chr8:1737567 1.30E-117 dispersed
Cmu08g0090 Cmu-Chr8:1737567 Cmu08g0694 Cmu-Chr8:19232717 3.80E-106 dispersed
Cmu08g0090 Cmu-Chr8:1737567 Cmu01g1905 Cmu-Chr1:32519972 7.70E-123 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1702 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g00081 Cam08g0078 Cec08g0173 Cco08g0136 Clacu08g0091 Cmu08g0090 Cre08g0079 . . . . . . . Cme09g00081 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012549 0 1 0 0 0 1 0 1 1 2 1 1 0 1 1 0 1 0 0 1 2 1 1 1 1 1 0 1 1 6 27