Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0107 ATGGGAGAGCCTAGCTCAATGGGGAGCCACGGCGGTGCGACGTCGAGCTATCGCGGTGTTCGGAAGAGGAAATGGGGGAAATGGGTGTCGGAGATTCGAGAGCCGGGAAAGAAGACGAGAATTTGGTTGGGGAGCTTCGAGACCCCGGAGATGGCAGCAGCGGCCTATGACGTCGCTGCCTACCACTTCCGTGGTCGGGATGCTCGTCTCAACTTCCCGCATCTTGTCAACTCTCTTCCCTTCCCTCTTAGCTCTACTCCTGACGACATCCGTGTTGCCGCCCACGAGGCGGCGTTGCGGTTACGAACAACACCCGCGGTTGTGTCGGAGGGTGAGGAATCTTCAGCCTCGGGTCTTGCCCCAATCACTGTCCGACTGTCGCCGAGCCAAATTCAGGCGATTAATGAGTCAACGTTGGACTCGCCGAAGATGTGGATGCAAATGTCGTCGGAGAGTTTGCTTATGGAGGAGTTCTCAAATGGTACTGTGTTTGTTGATGACATGGACGATGAGATGTGGGAGAATATGCATAATGATTCGTTGTGGGATCCTTAG 555 55.14 MGEPSSMGSHGGATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAAAAYDVAAYHFRGRDARLNFPHLVNSLPFPLSSTPDDIRVAAHEAALRLRTTPAVVSEGEESSASGLAPITVRLSPSQIQAINESTLDSPKMWMQMSSESLLMEEFSNGTVFVDDMDDEMWENMHNDSLWDP 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2063896 2064450 + CmPI595203_08g001070.1 Cmu08g0107 421593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0107 184 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0107 184 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0107 184 Pfam AP2 domain 16 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0107 184 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0107 184 CDD AP2 15 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0107 184 SMART rav1_2 16 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0107 184 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Cmu08g0107 184 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677(InterPro)
Cmu08g0107 184 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0107 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 146 IPR051032 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g1175 Cmu-Chr7:27039605 Cmu08g0107 Cmu-Chr8:2063896 1.30E-22 dispersed
Cmu08g0107 Cmu-Chr8:2063896 Cmu10g1090 Cmu-Chr10:3178844 3.40E-27 dispersed
Cmu08g0107 Cmu-Chr8:2063896 Cmu08g0109 Cmu-Chr8:2170118 1.60E-48 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6612 PF00847 AP2 3.60E-13 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0107 - - - 0.0