Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0149 ATGGATGCAATGGACGCGATCGAGGAGTTGGGAGAGCTGTCTGAAGCGATGCGCCAAGCGGCGGCTTTGCTTGCTGATGAAGATGTTGACGACAATTCTACTTCTGGTGCTTCTTCTCGTAGGGCTACGACTTTCCTCAACGTTGTGGCTTTGGGCAATGTTGGTGCTGGCAAATCTGCAGTTTTGAATAGTTTAATTGGGCATCCTGTTTTGCCAACGGGTGAAAATGGTGCTACGCGAGCTCCAATAAGCATTGATCTACAGAGGGATGGTTCTTTGAGTACCAAATCAATCATTCTGCAGATTGATAATAAATCTCAACAGGTTTCTGCAAGTGCTTTGCGACATTCTCTACAGGACAGGTTGAGCAAGGGTTCTTCAGGAAAGGGCCGAGATGAAATATATCTAAAGCTTCGCACAAGTACAGCACCTCCACTGAAGTTGGTTGATTTACCTGGGCTTGATCAACGGGCCATGGATGAATCTGTGGTTAGTGAATATGCCGAACACAATGATGCAATTTTGCTAGTTATTGTACCAGCTGCTCAGGCTCCTGAAATTGCTTCATCTAGAGCCCTAAGATCTGCCAAGGAATTTGATAAAGATGGTACCAGAACCATTGGTGTAATTAGCAAAATTGACCAAGCTTCTTCAGACCAGAAGTCTCTTGCTGCAGTGCAAGCTCTCCTGTTAAATCAAGGGCCAGCACGAGCGTCAGATATCCCATGGATTGCTTTAATTGGTCAATCTGTTTCAATAGCTACTGCACAGTCTGGATCTGTTGGCTCTGAGAATTCCATGGAGACTGCTTGGAGAGCAGAGAGTGAAAGTCTAAAATCTATACTAACTGGTGCACCTCAAAGTAAGCTAGGCAGGCTAGCTTTAGTTGATGCATTGTCCCAACAGATCCGGAAGCGAATGAAAGTCCGGCTTCCTAATCTTCTCTCTGGGTTACAAGGGAAGTCTCAAGTGGTTCAGGATGAGTTGGTTAGGCTTGGTGAGCAAATGGTCAATGGTGTTGAGGGGACTAGAGCTCTAGCTTTGGAACTTTGCCGTGAGTTTGAAGATAAGTTTCTCCAGCACATAGGCTCTGGTGAGGGTGCAGGTTGGAAAATTGTTGCTAGCTTTGAGGGGAATTTTCCAAATCGAATTAAGCAATTGCCTTTAGACAGACACTTCGATATTAATAATGTGAAGAGGATTGTATTAGAAGCTGATGGTTATCAGCCCTATCTAATATCACCGGAGAAAGGTTTGAGATCTTTAATAAAAGGTGTTTTGGAGCTTGCAAAAGAACCATCACGTCTCTGTGTTGATGAGGTGCACAGAGTTTTGATAGATATTGTTTCTGCTGCTGCTAATGGCACCCCAGGTCTTGGAAGATACCCACCATTCAAAAGAGAGGTTGTGGCCATTGCAAGCGCTGCCCTGGATGGGTTTAAAAATGAAGCAAAAAAGATGGTCGTGGCGTTAGTTGACATGGAGAGAGCATTTGTCCCACCACAGCACTTTATACGTCTCGTACAAAGAAGGATGGAAAGACAGCGCCGGGAAGAGGAAGTGAAGACTAGATCATCAAAAAAAGGACAAGAGGCTGAACAAGCGGTGTTAAACAGGGCAAGTAGTCCTCAAACAAATAGTCAGCAAGCTGGTGGAAGCTTGAAATCAATGAAAGAAAAACCTAGTAAGGAAGAGAAGGAAGAGAAGGAAAGTTCGGGTTTGAAGACAGCAGGTCCTGAGGGAGAGATAACAGCTGGTTTCTTGTTAAAGAAAAGTGCAAAAACTAATGGGTGGAGCAGGCGATGGTTTGTCTTGAATGAGAAGACTGGAAAGCTTGGATATACCAAGAAGCAAGAAGAACCACGCTTTCGTGCTGTCATTACTTTAGAGGATTGTAATATTGAAGAAGTTACAGATGAGGAAGAGCCTACACCTTCAAAGAGTTCAAAGGATAAAAAGGCTAATGGGCCAGATTCTGGAAAAGGATCAAGTCTTGTGTTTAAGATTACCAGCAAAGTTCCATATAAAACTGTTTTGAAAGCCCATAGCGCTGTTGTTTTGAAAGCGGAGAGTGTTGCAGACAAGGTGGAATGGACAAACAAGATACGCAATGTCATTCAACCATCCAAAGGAGGACAAACGAGAGGTGCATCCTCCGAAGGTGGTCTTACCATGCGGCAGAGTCTATCTGATGGTTCCCTAGATACTATGGCTCGAAAACCTGCTGATCCTGAAGAAGAGCTGCGGTGGATGTCTCAAGAAGTTCGTGGTTATGTTGAAGCAGTTTTGAATAGTTTGGCTGCAAATGTCCCCAAGGCTGTTGTACTTTGTCAAGTTGAGAAGGCCAAGGAAGATATGCTAAATCAATTATATAGCTCGATCAGTGCCCAGAGCTCAGCCAGGATTGAGGAGCTTCTTCAGGAGGATCAGAATGTAAGACGGAGGAGAGAACGTTATCAAAAACAATCCTCTCTCCTTTCAAAACTTACGCGCCAGCTCAGCATTCATGATAGTCGAGCAGCTGCTGCTGGTTGGTCTGATAGTGCTGCAGAAAGTAGTCCCAAAACTAGCGGATCACCTGGAGATGAATGGAGATCTGCATTTGATGCTGCTGCTAATGGTCGGGCTGACATCAGAAGATCTTCTTCCAATGGCCACAGTAGACATTCTAGTGATCCTGCACAGAACGGTGACATAAACTCAGGCTCAAACTCTAGCAGCCGTCGCACTCCAAACCGGCTGCCACCAGCACCTCCGCAATCTTCTTCTGGTTCCAAATACTTCTAG 2787 44.92 MDAMDAIEELGELSEAMRQAAALLADEDVDDNSTSGASSRRATTFLNVVALGNVGAGKSAVLNSLIGHPVLPTGENGATRAPISIDLQRDGSLSTKSIILQIDNKSQQVSASALRHSLQDRLSKGSSGKGRDEIYLKLRTSTAPPLKLVDLPGLDQRAMDESVVSEYAEHNDAILLVIVPAAQAPEIASSRALRSAKEFDKDGTRTIGVISKIDQASSDQKSLAAVQALLLNQGPARASDIPWIALIGQSVSIATAQSGSVGSENSMETAWRAESESLKSILTGAPQSKLGRLALVDALSQQIRKRMKVRLPNLLSGLQGKSQVVQDELVRLGEQMVNGVEGTRALALELCREFEDKFLQHIGSGEGAGWKIVASFEGNFPNRIKQLPLDRHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLIDIVSAAANGTPGLGRYPPFKREVVAIASAALDGFKNEAKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEEVKTRSSKKGQEAEQAVLNRASSPQTNSQQAGGSLKSMKEKPSKEEKEEKESSGLKTAGPEGEITAGFLLKKSAKTNGWSRRWFVLNEKTGKLGYTKKQEEPRFRAVITLEDCNIEEVTDEEEPTPSKSSKDKKANGPDSGKGSSLVFKITSKVPYKTVLKAHSAVVLKAESVADKVEWTNKIRNVIQPSKGGQTRGASSEGGLTMRQSLSDGSLDTMARKPADPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAQSSARIEELLQEDQNVRRRRERYQKQSSLLSKLTRQLSIHDSRAAAAGWSDSAAESSPKTSGSPGDEWRSAFDAAANGRADIRRSSSNGHSRHSSDPAQNGDINSGSNSSSRRTPNRLPPAPPQSSSGSKYF 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2925251 2938019 - CmPI595203_08g001490.1 Cmu08g0149 421635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0149 928 Pfam Dynamin GTPase effector domain 746 828 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu08g0149 928 SMART GED_2 743 829 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu08g0149 928 MobiDBLite consensus disorder prediction 557 575 - -
Cmu08g0149 928 ProSiteProfiles GED domain profile. 748 841 IPR020850 -
Cmu08g0149 928 MobiDBLite consensus disorder prediction 707 734 - -
Cmu08g0149 928 MobiDBLite consensus disorder prediction 512 529 - -
Cmu08g0149 928 MobiDBLite consensus disorder prediction 640 657 - -
Cmu08g0149 928 MobiDBLite consensus disorder prediction 530 555 - -
Cmu08g0149 928 FunFam Dynamin-2A 703 816 - -
Cmu08g0149 928 Gene3D Dynamin, middle domain 341 548 - -
Cmu08g0149 928 PANTHER DYNAMIN 42 833 IPR022812 GO:0003924(PANTHER)|GO:0005737(PANTHER)|GO:0005874(PANTHER)|GO:0008017(PANTHER)|GO:0016020(PANTHER)
Cmu08g0149 928 MobiDBLite consensus disorder prediction 512 580 - -
Cmu08g0149 928 MobiDBLite consensus disorder prediction 707 744 - -
Cmu08g0149 928 MobiDBLite consensus disorder prediction 634 663 - -
Cmu08g0149 928 Pfam Dynamin central region 264 503 IPR000375 -
Cmu08g0149 928 ProSiteProfiles PH domain profile. 581 707 IPR001849 -
Cmu08g0149 928 SMART dynamin_3 14 244 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu08g0149 928 FunFam Dynamin-2B isoform A 44 327 - -
Cmu08g0149 928 Coils Coil 802 822 - -
Cmu08g0149 928 FunFam Dynamin-2A 338 545 - -
Cmu08g0149 928 Gene3D Dynamin, middle domain 700 816 - -
Cmu08g0149 928 Pfam PH domain 585 706 IPR001849 -
Cmu08g0149 928 SUPERFAMILY PH domain-like 582 707 - -
Cmu08g0149 928 CDD DLP_1 48 312 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu08g0149 928 Pfam Dynamin family 48 212 IPR045063 -
Cmu08g0149 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 321 IPR027417 -
Cmu08g0149 928 SMART PH_update 582 709 IPR001849 -
Cmu08g0149 928 FunFam Dynamin-2A 574 711 - -
Cmu08g0149 928 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 71 80 IPR019762 -
Cmu08g0149 928 PRINTS Dynamin signature 182 200 IPR022812 -
Cmu08g0149 928 PRINTS Dynamin signature 201 217 IPR022812 -
Cmu08g0149 928 PRINTS Dynamin signature 45 63 IPR022812 -
Cmu08g0149 928 PRINTS Dynamin signature 70 87 IPR022812 -
Cmu08g0149 928 MobiDBLite consensus disorder prediction 887 911 - -
Cmu08g0149 928 Gene3D - 40 328 IPR027417 -
Cmu08g0149 928 Gene3D - 584 699 IPR011993 -
Cmu08g0149 928 MobiDBLite consensus disorder prediction 843 928 - -
Cmu08g0149 928 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 42 312 IPR030381 GO:0005525(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0149 K01528 - - csv:101220753 1657.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0149 Cmu-Chr8:2925251 Cmu11g0885 Cmu-Chr11:11795190 0.00E+00 dispersed
Cmu08g0149 Cmu-Chr8:2925251 Cmu09g1208 Cmu-Chr9:13798994 5.40E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1716 Blo01g01682 Blo12g00812 . Bda03g00360 Bpe02g00260 Bpe04g00320 Bma04g00337 Bma01g02448 . . Cma01g00877 Cma09g01291 Car01g00802 . Sed03g0698 Cpe06g00975 . Bhi04g02550 Tan11g0043 Cmetu03g0129 . Hepe02g3468 . Lcy10g2361 Cla08g00152 Cam08g0148 Cec08g0103 Cco08g0213 . Cmu08g0149 Cre08g0132 Cone4ag1154 . . . . . . Cme09g00107 . . Bda11g00922 . . . . . Sed11g1774 Cmo01g00920 Cmo09g01249 . . . Car09g01106 . Cpe02g00986 Bhi06g00143 Tan10g1858 Cmetu09g1009 . . . . Cla11g00799 Cam11g0836 Cec11g0820 Cco11g0822 Clacu11g1022 Cmu11g0885 Cre11g1279 Lsi08g00154 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001593 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 2 4 3 2 69