Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu08g0166 | ATGGCTTATGACCATTTGGATCCATCTAAAAGCTATTCGGTTGCTTCAGGACCAGGTCCAATCTCAAGGCCTGCACCAGAACTGAAGCTCTATCAGTTTTTTGTTTTCTGTATTCCAATTCTTTTCACTTTCATTCTTCTATTCCTTTTCTACCTCCTTTATCTTCGTCGACGAAGGGCTGATTGGACTTCCATTCGAATGCGAACATCTGCTGCAGCCAATAACAATAACATCTCTACATCTGAAGTTGGGTTGAAGAAAGAATTCAGGGAGATGCTTCCTATTATTGTATACAATGAGACATTCTTTGTCACTGATACACTTTGTTCGGTTTGTTTAGGAGAATACAAAACAGAAGATAAACTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTTGACTGCATTGATCATTGGCTGTCCAACCACAACACTTGTCCACTCTGCCGTCTCTCTGTCCTCTCACCGTCGTCTCAACCACCACATATTCAGATCGACATGGGACTCGAATCGTCGAACGAACAACAATGCGAAGAAGCACCTCCTCCACCCAGTACTCAAGCTTGTCAACATACAACACCTCCAGTGTAA | 594 | 42.59 | MAYDHLDPSKSYSVASGPGPISRPAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPSCGHVFHLDCIDHWLSNHNTCPLCRLSVLSPSSQPPHIQIDMGLESSNEQQCEEAPPPPSTQACQHTTPPV | 197 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 3485959 | 3487480 | + | CmPI595203_08g001660.1 | Cmu08g0166 | 421652 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu08g0166 | 197 | SMART | ring_2 | 109 | 150 | IPR001841 | - | |
Cmu08g0166 | 197 | CDD | RING-H2_EL5-like | 109 | 151 | - | - | |
Cmu08g0166 | 197 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 156 | IPR013083 | - | |
Cmu08g0166 | 197 | Pfam | Ring finger domain | 108 | 151 | IPR001841 | - | |
Cmu08g0166 | 197 | ProSiteProfiles | Zinc finger RING-type profile. | 109 | 151 | IPR001841 | - | |
Cmu08g0166 | 197 | MobiDBLite | consensus disorder prediction | 171 | 187 | - | - | |
Cmu08g0166 | 197 | PANTHER | RING-H2 FINGER PROTEIN ATL16 | 21 | 173 | IPR044600 | GO:0016567(InterPro)|GO:0016740(InterPro) | |
Cmu08g0166 | 197 | MobiDBLite | consensus disorder prediction | 171 | 197 | - | - | |
Cmu08g0166 | 197 | SUPERFAMILY | RING/U-box | 93 | 162 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g0173 | Cmu-Chr1:1706828 | Cmu08g0166 | Cmu-Chr8:3485959 | 1.60E-20 | dispersed | |
Cmu04g0592 | Cmu-Chr4:19303710 | Cmu08g0166 | Cmu-Chr8:3485959 | 1.20E-08 | dispersed | |
Cmu08g0166 | Cmu-Chr8:3485959 | Cmu08g0756 | Cmu-Chr8:19870768 | 5.50E-15 | dispersed | |
Cmu08g0166 | Cmu-Chr8:3485959 | Cmu09g0350 | Cmu-Chr9:3351659 | 3.50E-09 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu08g0166 | K19039 | - | csv:101219324 | 348.591 |