Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0166 ATGGCTTATGACCATTTGGATCCATCTAAAAGCTATTCGGTTGCTTCAGGACCAGGTCCAATCTCAAGGCCTGCACCAGAACTGAAGCTCTATCAGTTTTTTGTTTTCTGTATTCCAATTCTTTTCACTTTCATTCTTCTATTCCTTTTCTACCTCCTTTATCTTCGTCGACGAAGGGCTGATTGGACTTCCATTCGAATGCGAACATCTGCTGCAGCCAATAACAATAACATCTCTACATCTGAAGTTGGGTTGAAGAAAGAATTCAGGGAGATGCTTCCTATTATTGTATACAATGAGACATTCTTTGTCACTGATACACTTTGTTCGGTTTGTTTAGGAGAATACAAAACAGAAGATAAACTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTTGACTGCATTGATCATTGGCTGTCCAACCACAACACTTGTCCACTCTGCCGTCTCTCTGTCCTCTCACCGTCGTCTCAACCACCACATATTCAGATCGACATGGGACTCGAATCGTCGAACGAACAACAATGCGAAGAAGCACCTCCTCCACCCAGTACTCAAGCTTGTCAACATACAACACCTCCAGTGTAA 594 42.59 MAYDHLDPSKSYSVASGPGPISRPAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPSCGHVFHLDCIDHWLSNHNTCPLCRLSVLSPSSQPPHIQIDMGLESSNEQQCEEAPPPPSTQACQHTTPPV 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3485959 3487480 + CmPI595203_08g001660.1 Cmu08g0166 421652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0166 197 SMART ring_2 109 150 IPR001841 -
Cmu08g0166 197 CDD RING-H2_EL5-like 109 151 - -
Cmu08g0166 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 156 IPR013083 -
Cmu08g0166 197 Pfam Ring finger domain 108 151 IPR001841 -
Cmu08g0166 197 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Cmu08g0166 197 MobiDBLite consensus disorder prediction 171 187 - -
Cmu08g0166 197 PANTHER RING-H2 FINGER PROTEIN ATL16 21 173 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Cmu08g0166 197 MobiDBLite consensus disorder prediction 171 197 - -
Cmu08g0166 197 SUPERFAMILY RING/U-box 93 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0173 Cmu-Chr1:1706828 Cmu08g0166 Cmu-Chr8:3485959 1.60E-20 dispersed
Cmu04g0592 Cmu-Chr4:19303710 Cmu08g0166 Cmu-Chr8:3485959 1.20E-08 dispersed
Cmu08g0166 Cmu-Chr8:3485959 Cmu08g0756 Cmu-Chr8:19870768 5.50E-15 dispersed
Cmu08g0166 Cmu-Chr8:3485959 Cmu09g0350 Cmu-Chr9:3351659 3.50E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0166 K19039 - csv:101219324 348.591