Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0168 ATGCTACCTAGCCACATATTTTGGACCTATTTTCCTTTTATAGGTGCTGAGCTTAAGATTCAACTGATAAATCACATAATACTCCATGAAAGCAGGAGTCAGCTATTTGAACAAATTGTGTGTAAGAAAGTTGGTCATGTTGGACATCCTTTGGGGTCGCATCCTTTCTCATCTCGAGTTGGCTTTCCAGATTCGAGACAAAATTTTACTCATACAGTCACAAAGAATGCAAGTGATCGAGTTTATGCTGCTTATAATGTATATAAGGGAAAAGCTGGACTCTCTATGAAGCCTTGCTTGCCAACTTTCACTAAATTAGAGTCTGGGAGTCTTGTAATTGATCGACGTGGCTCAGTAATGCTGTCATTCTTTCCTGCCATAGGCGAGCGCAAGTATGACTGGACAAAGAAACAGTTGTTTGCATTGTCTCCAACAGAAGTTGGTACTTTAATCAGTTTGGGTCCCAGAGATTCATGCGAATTCTTCCATGACCCTGGAATGCTTTCCAGTACTGCTGGTCAAGTAAGGAAGAGCTTAACAATTAAGGCCCATGCAGATGGCAATGGCTATTTCATCTCTTTGAATGTTGTTAATAACTCACAAAACACCAAAGATTTCTTGAGTGTTCCCTTCACAGCAGGCGAATTTTCTGTGATGAAGACGGCTTGCAGTCATCCCTTGGGTTTCTATGATGAAAATTATAAACCCCAAGAACTTATCCAGATTCTGATAGGAATTGAAAAGGAAGAAAAAGATAGAAATGATAGAATGAGAATCTTATTCAATATCAAGTATAATATGATGTCCAGGCCATTCCCTTTTTACCCCTCGACAGAATTGGTGGCCTATCAGATTCTTCTGTTGTTAACAGTATTCTCTTATTACCTGACTTTTGCTCTGCCTCACATTCTTGGTTGGGACCGGCTGACCCAGCCTAATCCTGGCATGGTTGAGATATGCTCAACTGATGTGTTTAGAGTAAGACTTAGATGTAGATTCTTCATCAAGTCATTGTCAAGTTCTCAACTCTATTTGAATATAATTATTCATCGCCTTACTCTTCAAGCTACTGTCCATTTACCACCTATCTCACCTCTTGATGCCTAA 1107 39.75 MLPSHIFWTYFPFIGAELKIQLINHIILHESRSQLFEQIVCKKVGHVGHPLGSHPFSSRVGFPDSRQNFTHTVTKNASDRVYAAYNVYKGKAGLSMKPCLPTFTKLESGSLVIDRRGSVMLSFFPAIGERKYDWTKKQLFALSPTEVGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLTIKAHADGNGYFISLNVVNNSQNTKDFLSVPFTAGEFSVMKTACSHPLGFYDENYKPQELIQILIGIEKEEKDRNDRMRILFNIKYNMMSRPFPFYPSTELVAYQILLLLTVFSYYLTFALPHILGWDRLTQPNPGMVEICSTDVFRVRLRCRFFIKSLSSSQLYLNIIIHRLTLQATVHLPPISPLDA 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3516166 3524064 - CmPI595203_08g001680.1 Cmu08g0168 421654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0168 368 SUPERFAMILY ssDNA-binding transcriptional regulator domain 78 227 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu08g0168 368 Gene3D Transcriptional Coactivator Pc4; Chain A 73 230 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu08g0168 368 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 58 225 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Cmu08g0168 368 Pfam Whirly transcription factor 87 221 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0168 Cmu-Chr8:3516166 Cmu08g0829 Cmu-Chr8:20604731 4.00E-35 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6616 PF08536 Whirly 9.20E-54 CL0609 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0168 K26561 - csv:101219085 329.331