Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0200 ATGGATACCAAAGGTCGACTCATTGCTGGTTCTCATAACAGAAATGAGTTTGTTCTCATCAATGCTGATGAGGTTGCAAGAGTGACATCTGTGAAAGAGTTAAGTGGGCAAATTTGCCAGATCTGTGGGGATGAGATAGAAATCACCGTAGATGGAGAGCCATTTGTTGCCTGTAATGAATGTGCCTTTCCAGTTTGTAGACCTTGCTATGAATATGAAAGAAGAGAGGGCAATCAAGCTTGTCCTCAGTGCAAAACCAGATACAAGCGTCTCAAAGGCAGTCCTCGGGTTGAAGGTGATGAAGAAGAAGATGATATCGATGATCTTGAGAATGAGTTTGATATTGCAAACAAAGATCCTAGCAGTGCATCTGAGGCAATGCTTTATCCTCACCTTGCCGTTGGGCGAGGTTCTCATGTTAATGGTTCTGGAAATATGGCTTCTGACCTTGACTCCTCATCCGTTCCAACTGATATCCCTCTCCTGACCTATGGCCAAGAGGATGCTGGAATTTCCTCCGATAAGCATGCTCTAATTATTCCTCCTTTTATTAGCCGTGGAAAAAAGGTCCATCCAGCGCCATTCACTGATTCCATGTCTGCCAATCCAAGGCCAATGGATCCGAAGAAGGATTTAGCTGTGTATGGATATGGAACTGTTGCGTGGAAGGAAAGAATGGAAGACTGGCGGAAGAAACAAAATGAAAGACTTCAAGTAATTAAGCATGAGGGTGGAGGTGGAAAAGGTGATGACGAGCTCGATGATACAGATTTGCCTATGATGGATGAAGGGAGGCAACCGCTTTCCAGAAAACTGCCTATCCCCTCGAGCAAGATAAACCCATACAGAATGATAATCGTACTTCGTATTGTCATCCTTTGCCTCTTTTTCCACTATCGTATTCTTCATCCTGTCCATGAGGCATATGGGCTGTGGTTAACATCAGTAATCTGTGAGATATGGTTTGCTGCATCATGGATATTGGATCAGTTCCCAAAATGGTGCCCCATTGTCCGAGAAACTTACCTTGATCGGCTGTCGTTAAGATACGAAAAAGATGGCAAGCCATCAGAATTGGCTTCTATAGACGTTTATGTCAGTACAGTGGATCCATTGAAGGAGCCTCCTCTCATCACAGCAAACACCGTCCTATCTATTCTTGCCGTCGATTATCCGGTAGACAAGGTTTCATGCTATGTTTCTGATGATGGTGCTGCGATGCTTACTTTTGAAGCCCTTTCGGAAACTTCTGAGTTTGCAAGAAAGTGGGTTCCTTTCTGCAAGAAGTTCAATATTGAACCTCGTGCCCCAGAATGGTATTTTGCCCAGAAGGTTGACTATTTGAAAGACAAAGTTGATCCAACATTTGTCAGGGAACGACGTGCAATGAAGAGGGACTACGAAGAATTTAAAGTTCGAATCAATGGGCTTGTTGCCATGGCTCAAAAAGTTCCTGAAGATGGTTGGACAATGCAGGATGGAACTCCATGGCCCGGGAACAATGTCCGGGATCATCCTGGAATGATTCAGGTATTCCTCGGTCAAAACGGTGTCCGTGACTTGGAGGGAAATGAATTACCTCGTCTAGTGTATGTATCTCGTGAGAAGAGGCCAGGATTTGATCACCACAAGAAAGCCGGTGCCATGAATTCTCTGGTGCGTGTCTCGGCAATTATCTCGAATGCTCCATACATTTTGAACGTTGATTGTGATCACTACATTAACAACAGCAAGGCACTTAGAGAAGCAATGTGTTTCATGATGGACCCAATTTCGGGAAAAAGAATATGCTATGTGCAGTTTCCACAAAGATTTGATGGCATTGATAGGCACGATCGATACTCTAATCGCAATGTTGTATTCTTCGATATCAACATGAAAGGATTGGATGGTATTCAAGGGCCGATATATGTCGGAACTGGATGTGTCTTTAGGAGGCAGGCTCTTTATGGCTATGATGCCCCTGCTAAGAAGAAAGCACCAAGAAGGACTTGCAACTGTCTTCCAAAATGGTGCTGTTGTTGCTGTGGAACTAGAAAGAAGACTAAAACAAAGACCAGTGATAAAAAGAAATTAAAGACCAAAGATACGTCGAAACAGATTCACGCACTTGAAAATATTGAAGAAGGAATTGAAGGAATAGATAACGAGAAATCATCTCTGATGCCCCAAGTTAAGTTTGAGAAGAAGTTTGGGCAATCACCAGCATTCATTGCTTCCACACTCATGGAAGATGGTGGCGTGCCTGGAGGAGGGACTTCTGCTTCGTTGTTGAAAGAAGCCATCCACGTAATCAGTTGTGGTTATGAAGATAAATCCGAGTGGGGTAAAGAGGTAGGGTGGATATATGGGTCTGTTACAGAGGATATTTTAACAGGTTTCAAGATGCATTGCCATGGATGGAGATCAGTTTATTGCATTCCTAAAAGGCCAGCATTCAAGGGTTCAGCTCCTATTAACTTGTCTGATCGTCTACACCAAGTTCTTCGGTGGGCACTTGGGTCAGTTGAAATTTTGTTGAGTAGGCACTGTCCAATATGGTACGGATATGGATGTGGTTTGAAGTGGCTCGAGCGTTTCTCATACATAAACTCCGTTGTTTATCCATTGACGTCAGTTCCACTGATTGCTTATTGTACGCTGCCAGCTGTCTGCCTGCTTACAGGGCAGTTTATCGTCCCTGAGCTAAGCAACTATGCCAGTATAATTTTCATGGCACTCTTCATCTCTATAGCAGCAACCGGTATCCTAGAAATGCAGTGGGGAGGTGTTGGGATCCATGATTGGTGGAGAAATGAGCAGTTCTGGGTTATCGGTGGTGCTTCGTCTCATCTTTTTGCACTTTTCCAGGGTCTGCTAAAGGTTTTGGCTGGTGTCAACACAAATTTCACCGTCACATCCAAAGGAGGAGACGATGGGGAGTTTGCCGAGCTTTACCTCTTCAAGTGGACGTCGTTGTTGGTCCCTCCCTTGACCTTATTGATCATAAACATTATTGGAGTAGTGGTCGGAATTTCAGATGCCATCAACAATGGTTACGACTCATGGGGCCCGCTCATTGGTAAGCTGTTCTTTGCATTCTGGGTGATTGTCCATCTGTATCCATTCCTCAAGGGTTTGATGGGGAAGCAAGACAAGGTACCAACCATTATCATTGTGTGGTCAATCCTTCTATCATCCATATTGTCACTTTTATGGGTCCGGATCAACCCCTTCCTCGACAAGGGTGGCATTGTGTTGGAAGTTTGCGGGTTAAACTGTGACGACTAA 3270 44.22 MDTKGRLIAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDLENEFDIANKDPSSASEAMLYPHLAVGRGSHVNGSGNMASDLDSSSVPTDIPLLTYGQEDAGISSDKHALIIPPFISRGKKVHPAPFTDSMSANPRPMDPKKDLAVYGYGTVAWKERMEDWRKKQNERLQVIKHEGGGGKGDDELDDTDLPMMDEGRQPLSRKLPIPSSKINPYRMIIVLRIVILCLFFHYRILHPVHEAYGLWLTSVICEIWFAASWILDQFPKWCPIVRETYLDRLSLRYEKDGKPSELASIDVYVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFAQKVDYLKDKVDPTFVRERRAMKRDYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDLEGNELPRLVYVSREKRPGFDHHKKAGAMNSLVRVSAIISNAPYILNVDCDHYINNSKALREAMCFMMDPISGKRICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKAPRRTCNCLPKWCCCCCGTRKKTKTKTSDKKKLKTKDTSKQIHALENIEEGIEGIDNEKSSLMPQVKFEKKFGQSPAFIASTLMEDGGVPGGGTSASLLKEAIHVISCGYEDKSEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSVPLIAYCTLPAVCLLTGQFIVPELSNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKGGDDGEFAELYLFKWTSLLVPPLTLLIINIIGVVVGISDAINNGYDSWGPLIGKLFFAFWVIVHLYPFLKGLMGKQDKVPTIIIVWSILLSSILSLLWVRINPFLDKGGIVLEVCGLNCDD 1089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4217416 4222909 - CmPI595203_08g002000.1 Cmu08g0200 421686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0200 1089 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
Cmu08g0200 1089 Pfam Zinc-binding RING-finger 30 105 IPR027934 -
Cmu08g0200 1089 CDD mRING-HC-C4C4_CesA 37 87 - -
Cmu08g0200 1089 Pfam Cellulose synthase 362 1076 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Cmu08g0200 1089 SUPERFAMILY RING/U-box 28 107 - -
Cmu08g0200 1089 SUPERFAMILY Nucleotide-diphospho-sugar transferases 376 871 IPR029044 -
Cmu08g0200 1089 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cmu08g0200 1089 Coils Coil 99 119 - -
Cmu08g0200 1089 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 282 1057 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cmu08g0200 1089 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 508 654 IPR029044 -
Cmu08g0200 1089 FunFam Cellulose synthase 479 653 - -
Cmu08g0200 1089 FunFam Cellulose synthase 21 112 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1525 Cmu-Chr1:28862400 Cmu08g0200 Cmu-Chr8:4217416 0.00E+00 dispersed
Cmu08g0200 Cmu-Chr8:4217416 Cmu11g1148 Cmu-Chr11:21710662 0.00E+00 dispersed
Cmu08g0200 Cmu-Chr8:4217416 Cmu02g0903 Cmu-Chr2:11686605 7.30E-101 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0200 K10999 - csv:101214061 2113.19