Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0246 ATGGTTGAGACAATAGATATGGAGACAAAAGCAATGGGATGTGGGATAACTTTACTAATTGTTATGTGCTACGCCCACCTGAACAGGTTTCAATTTACCACAGAAAAACTTCTCAAATCCCCAGAACTCAAAGAGAACTCAAATTCCTCACCGGAGCCATCAATGGCCGCCCTTCACCAAACCGCCGCCTCTCTCCAGGCCAAGCTCCTTCCAACCGTCCGATTCTCCCGAACCACTCCCGTAAACCTCTCCTTCTCCGCCACTTTTCCTTCCCGCGGACTCCGCCTCAGCCACCACCGCTCTCACGGCGGCGCTAAAATGTCCGCCACAGCCGCTGGAAGCTACGCCGCAGCGCTGGCCGAAGTCGCTTCCTCGAATAACACGCTGGAAGCCACAAGCGGCGACGTGGAGAAGATTGAGAGCTTGTTCGCGGATCCGCAGGTGCTCAATTTCTTCGCGAACCCAACGATTAGCATCGAGAAGAAACTGGCAGTGGTGGATGAAATCGCTTCGTCCTCATCTCTACAGCCGCATTCAGCGAATTTCTTGAAGATCCTGGTGGACGCGAAGAGGATCGACATCCTGAAGGAGATCGTGACGGAGTTTGAATTGGTATACAACAAGATTACGAACACGGAGCTTGCGGTGGTGAGTTCGGTTGTGCAGTTGGAGCAGCAGCATTTGGCGCAGATCGCGAAGCAGGTGCAGAAATTGAGCGGAGCGAAGAATGTGAGGATAAAGACGCAGATCGATCCGAGTCTGGTGGCTGGATTCACAGTCAGGTTTGGGAATTCTGGATCGAAACTTATTGATTTGAGCGTCAAGAAACAGCTTGAGGAAATTGCTGCTCAGCTTGATCTTGGCAATATTCAACTGGCTGTATGA 885 51.53 MVETIDMETKAMGCGITLLIVMCYAHLNRFQFTTEKLLKSPELKENSNSSPEPSMAALHQTAASLQAKLLPTVRFSRTTPVNLSFSATFPSRGLRLSHHRSHGGAKMSATAAGSYAAALAEVASSNNTLEATSGDVEKIESLFADPQVLNFFANPTISIEKKLAVVDEIASSSSLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5458313 5460617 - CmPI595203_08g002460.1 Cmu08g0246 421732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0246 294 Hamap ATP synthase subunit delta [atpD]. 107 287 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cmu08g0246 294 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 108 211 IPR026015 -
Cmu08g0246 294 PANTHER ATP SYNTHASE DELTA CHAIN 69 285 IPR000711 GO:0009535(PANTHER)|GO:0009772(PANTHER)|GO:0009773(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0045261(PANTHER)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Cmu08g0246 294 Pfam ATP synthase delta (OSCP) subunit 112 285 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cmu08g0246 294 PRINTS ATP synthase delta subunit signature 242 257 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cmu08g0246 294 PRINTS ATP synthase delta subunit signature 260 278 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cmu08g0246 294 PRINTS ATP synthase delta subunit signature 180 191 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cmu08g0246 294 PRINTS ATP synthase delta subunit signature 191 205 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cmu08g0246 294 PRINTS ATP synthase delta subunit signature 111 130 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cmu08g0246 294 NCBIfam ATP synthase F1 subunit delta 112 285 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cmu08g0246 294 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 244 263 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
Cmu08g0246 294 Gene3D - 111 203 IPR026015 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0246 Cmu-Chr8:5458313 Cmu09g0400 Cmu-Chr9:3848214 9.80E-08 dispersed
Cmu08g0246 Cmu-Chr8:5458313 Cmu10g2009 Cmu-Chr10:25827870 5.20E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0246 K02113 - csv:101211740 398.282