Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0275 ATGGTACCTTCGGGACCATCTACTCCCATTGGTGGTGCGCAGTCTGTTTCACCGTCGCTTTTGAGATCAAATTCTGGAATGATGGGAGCACAAGGGGGGCTGCCTTCTCAGTCAGCTTTTCCTTCTCTTGTATCCCCACGGACACAGTTTAGCAGTATGAATATGCTTGGTAATACACCCAGTATGTCTTCTCTCCTAAATCAGTCATTTGGTAATGGAGTTCCGAATTCTGGGCCCTCAGGCCTTGGAAACAGCCAACGAGGAGTTATGGACCCTGGTTCTGAGTCAGATCCATTTTCACTTGTTGGCAATGGTGTGAACTTCAACAATACCCCATCGTCATTGGTGACATCAAATACAGCAAACCCTGGTTCATCTAGTCAAGTTTCAGGGCAGCAATTTTCAAATCATTCTAGCAGCCAAATAATACCCAATCAACAGCAACCACAGCAAATTGAACCCCAGAACTTTCAACATGGTCAGCATTCAATGCAACAGTTCGCTACGTCTAATAACATACAGCAGGCACAGCAGCAGCAACAACAACAATTCCAACGAGGAAGCTTGTGCGGTGTTGGACCCGTCAAGTTAGAGCCTCAAATGAATAATAATGATCTTCAAGCACAGCAACTACAGCAGCAGCAGCAGTTGCAGTCAATGAGGAATCTTGGTCCTGTGAAACTGGAACCACAACAACTTCAATCAATGAGAAACATGGGTCCTGTGAAATTGGAACCTCAACAGTCTGATCAGTCATTGTTTCTACAGCAGCAACATCAACATCAACAGCAACAGCAACAGCAACAACAGCAGCTACTCAGTATGTCTAGGCAGTCCTCTCAGGCTGCTGCTGCACACATTAATCTTTTGCAACAACAAAGACTCTTGCAATTGCAACACCAACAGCAACTCCTGAAGGCTATACCTCAGCAAAGGCCACATTTGCCTCAACAATTTCAACAACAAAATTTGCCATTGAGATCCCCTGTAAAATCAGTTTATGAACCTGGCATGTGTGCTCGACGTTTAACAAGTTATATGTGCCAACAACAGCAAAGGCCTGAAGACAACAATATTGAGTTCTGGAGGAAATTTGTTGCAGATTACTTTGCTCCCCATGCCAAAAAGAAATGGTGCGTTTCCATGTATGGAAATGGTCGCCAAACAACTGGTGTATTTCCACAGGATGTTTGGCATTGTGAAATATGCAACCGCAAGCCTGGTCGAGGTTTTGAAGCGACTTTCGAAGTTCTCCCAAGGCTGTTCAAAATCAAGTATGAGAGTGGAACGCTCGAAGAGCTTCTTTATGTTGATATGCCCCGCGAATATCATAATTCATCTGGACAAATTGTCCTTGATTACGCAAAAGCAATACAAGAAAGCGTATTTGAGCAACTTCGTGTTGTTCGCGATGGGCAACTTCGAATAGTTTTTTCTCCAGACTTAAAGATATGTTCTTGGGAATTTTGTGCTCGACGTCATGAAGAGCTTATTCCTCGAAGGTTGCTAATACCTCAGGTTAGTCAGCTGGGTGCAGCTGCTCAGAAGTATCAGACTGCAATTCAAAATGCATCATCTAACTTGCCTACTCCAGAGTTACAAAATAATTGCAACATGTTTGTGGGCTCAGCTAGACAATTGGCCAAGGCGTTGGAAGTGCCATTAGTAAATGACTTGGGATATACGAAGAGATACGTTCGGTGCCTTCAGATATCAGAAGTCGTCAATAGTATGAAGGACTTGATAGATTACAGCCAAGAAACTACGACTGGGCCAATTGAGAGTTTGGCAAAGTTTCCGCGGAAGACGAATGCTTCACCAGGCTTCCACAGCCAAGCTCAAAATATGGAGCAACAATTACCTCAGCCGCAGCAAACAATTGATCAAAACGCAAATGGGGACCAAAGCTCTGCTCAGGCTGCTTCAATGCAGCTTGCTGCTAACAATGGTGTTCCAAGTGCAAATAACTCTGGTAATCCAGCGTCAACCTCATCCCCTGCCAGTACCATTGTTGGGTTACTCCACCAGAACTCCATGAACTCCAGACAGCAGAACTCTATCAACAGCGCTGGCAGCCCTTATGCCGGAAATTCTGCGCAAATATCGTCTCCAGGTTCCTCCACCACGATTGCTCAGGCACAAGCTAACTCCTCGTTCCAATCGCCTACATTGTCCTCACCTAACAATCACCCACAATCATCAATTGGCACTGCAACTACTAATCACATGAGTGCCACTAATTCTCCGGCAAATGTTCCCTTGCAACAGCCAACACAATCCTCAGATGCTGATCAAAACGATTCCCAAAGTTCCGTACAAAAGATTATTCAGGAATACATGATGTCGAATCATCTAAACGGGATGAACACAATGACTGGTGTATCCTCTATAGGAGATGAGGCGAAAACTGTTAACGGGATGTTGCCAGGAAACAACATTATGAGTCTCAATGGACGGAATGGACTCGTCGGGACTGGAACTGCTAATGGCGTTCCTGGGATCAGGAATGCGGGATATGGCTCAATGAGTGGGGGACTTGCTCAGGCTTCTATGGTCAATGGAATGAAGCCGGCAATGGGAAATAACTCGATTTCGAACGGGAGAATCGGGATGGCATCATTGGCTCGAGGACAGAGCATAAATCATCAAGATTTGGGGGACCGCTTCTTAATGGACTTGGAGCTGTGA 2688 45.2 MVPSGPSTPIGGAQSVSPSLLRSNSGMMGAQGGLPSQSAFPSLVSPRTQFSSMNMLGNTPSMSSLLNQSFGNGVPNSGPSGLGNSQRGVMDPGSESDPFSLVGNGVNFNNTPSSLVTSNTANPGSSSQVSGQQFSNHSSSQIIPNQQQPQQIEPQNFQHGQHSMQQFATSNNIQQAQQQQQQQFQRGSLCGVGPVKLEPQMNNNDLQAQQLQQQQQLQSMRNLGPVKLEPQQLQSMRNMGPVKLEPQQSDQSLFLQQQHQHQQQQQQQQQQLLSMSRQSSQAAAAHINLLQQQRLLQLQHQQQLLKAIPQQRPHLPQQFQQQNLPLRSPVKSVYEPGMCARRLTSYMCQQQQRPEDNNIEFWRKFVADYFAPHAKKKWCVSMYGNGRQTTGVFPQDVWHCEICNRKPGRGFEATFEVLPRLFKIKYESGTLEELLYVDMPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQTAIQNASSNLPTPELQNNCNMFVGSARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSQETTTGPIESLAKFPRKTNASPGFHSQAQNMEQQLPQPQQTIDQNANGDQSSAQAASMQLAANNGVPSANNSGNPASTSSPASTIVGLLHQNSMNSRQQNSINSAGSPYAGNSAQISSPGSSTTIAQAQANSSFQSPTLSSPNNHPQSSIGTATTNHMSATNSPANVPLQQPTQSSDADQNDSQSSVQKIIQEYMMSNHLNGMNTMTGVSSIGDEAKTVNGMLPGNNIMSLNGRNGLVGTGTANGVPGIRNAGYGSMSGGLAQASMVNGMKPAMGNNSISNGRIGMASLARGQSINHQDLGDRFLMDLEL 895
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6177206 6187899 - CmPI595203_08g002750.1 Cmu08g0275 421761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0275 895 MobiDBLite consensus disorder prediction 100 182 - -
Cmu08g0275 895 Pfam LIM-domain binding protein 342 596 IPR029005 -
Cmu08g0275 895 Coils Coil 203 223 - -
Cmu08g0275 895 MobiDBLite consensus disorder prediction 1 182 - -
Cmu08g0275 895 MobiDBLite consensus disorder prediction 648 667 - -
Cmu08g0275 895 MobiDBLite consensus disorder prediction 614 643 - -
Cmu08g0275 895 MobiDBLite consensus disorder prediction 679 771 - -
Cmu08g0275 895 MobiDBLite consensus disorder prediction 243 274 - -
Cmu08g0275 895 MobiDBLite consensus disorder prediction 8 91 - -
Cmu08g0275 895 PANTHER LIM DOMAIN-BINDING PROTEIN 231 864 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0886 Cmu-Chr5:8075942 Cmu08g0275 Cmu-Chr8:6177206 1.50E-93 dispersed
Cmu08g0275 Cmu-Chr8:6177206 Cmu08g0594 Cmu-Chr8:18096999 1.20E-263 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0275 - - - 0.0