Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu08g0297 | ATGGAGATGGAGCAGTTCAAGGTTTTGGCTCTGGGTTTCGTCTCTTTGATCTTGCTGGTTCCTCCACTATGGCGCGTTTCTGCTAACATGGAAGGTGATGCTTTGCATAGCCTAAGAACCAGCTTGCAGGATCCTAACAATGTCTTGCAGAGTTGGGATCCCACTCTCGTCAATCCCTGTACATGGTTTCATGTTACATGCAATAATGATAATAGTGTCATAAGAGTTGATCTTGGAAATGCAGCTTTATCAGGCACACTTGTTCCACAGCTTGGCTTGCTAAAAAATTTGCAGTATCTAGAGCTCTACAGTAATAACATAAGTGGAGTAATTCCGAATGATCTGGGGAATCTGACTAGTTTGGTGAGCTTAGATCTTTATTTGAACAGATTTTCGGGTCCAATTCCAGACACATTGGGCAAGCTGTCAAAACTACGATTTCTCCGACTGAACAACAACAGCTTATCAGGCCCCATTCCTATGTCATTGACTAATATTTCATCCCTTCAAGTGTTGGATCTATCAAATAACCATCTCTCAGGCCCGGTTCCAGATAACGGTTCCTTCTCCTTATTCACCCCCATCAGTTTTGCCAACAACTTGGATCTTTGTGGCCCTGTTACTGGCCGTCCTTGCCCTGGATCTCCTCCATTTTCTCCTCCTCCACCATTTGTTCCACCGCCACCTATATCTTCACCAGGAGGGAATAGTGCTACTGGAGCTATTGCTGGTGGAGTTGCTGCAGGTGCTGCTTTACTTTTTGCAGCTCCAGCAATTGCATTTGCATGGTGGCGTCGTAGGAAACCCCAAGAAGTTTTCTTTGATGTTCCTGCCGAAGAGGATCCTGAAGTGCATCTGGGACAGCTTAAAAGATTTTCACTAAGAGAACTACAAGTGGCAACTGATAGTTTTAGTAACAAGAACATACTTGGTAGGGGTGGATTTGGCAAAGTCTATAAAGGTCGATTGGCAGACGGTTCTTTAGTAGCTGTAAAAAGACTTAAGGAAGAACGTACACCAGGTGGAGAGCTGCAGTTTCAAACAGAAGTAGAGATGATCAGCATGGCTGTGCATCGGAACCTGCTACGGCTACGTGGGTTTTGCATGACGCCAACTGAACGACTTCTTGTTTACCCCTACATGGCCAATGGAAGTGTTGCGTCTTGCTTAAGAGAACGACCACCATCCCAACCACCTCTTGATTGGAGAACGAGAAAGCGAATTGCATTGGGATCTGCGAGAGGGCTGTCTTATTTGCATGATCACTGTGATCCGAAGATTATTCATCGCGATGTAAAAGCTGCAAATATTTTGCTGGATGAGGAGTTTGAAGCTGTTGTAGGGGACTTTGGGTTGGCCAAACTTATGGATTACAAAGATACTCATGTCACCACTGCAGTACGTGGTACGATTGGACATATAGCTCCTGAGTACCTTTCCACTGGGAAATCTTCTGAGAAAACAGATGTTTTCGGGTATGGTATCATGCTTTTAGAGCTTATCACTGGTCAAAGGGCTTTCGATTTGGCTCGACTTGCCAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTCCTGAAAGAGAAGAAGTTAGAGATGCTGGTTGACCCTGATCTTCAGAATAATTATGTAGAATCTGAGGTAGAACAGTTGATTCAAGTTGCCTTACTTTGCACACAAGGCTCCCCGATGGACCGACCGAAGATGTCCGAGGTGGTGAGAATGCTTGAAGGTGATGGATTGGCAGAAAGATGGGATGAGTGGCAAAAGGTGGAGATCCTTCGGCAAGAAATCGATCTATCGCCCCATCCAAATTCCGATTGGATTGTTGATTCAACTGAAAATCTACATGCAGTTGAGCTGTCGGGTCCAAGATGA | 1884 | 44.96 | MEMEQFKVLALGFVSLILLVPPLWRVSANMEGDALHSLRTSLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGTLVPQLGLLKNLQYLELYSNNISGVIPNDLGNLTSLVSLDLYLNRFSGPIPDTLGKLSKLRFLRLNNNSLSGPIPMSLTNISSLQVLDLSNNHLSGPVPDNGSFSLFTPISFANNLDLCGPVTGRPCPGSPPFSPPPPFVPPPPISSPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEVFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPLDWRTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYVESEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEILRQEIDLSPHPNSDWIVDSTENLHAVELSGPR | 627 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 7323144 | 7332623 | + | CmPI595203_08g002970.1 | Cmu08g0297 | 421783 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu08g0297 | 627 | Pfam | Leucine rich repeat N-terminal domain | 29 | 68 | IPR013210 | - | |
Cmu08g0297 | 627 | FunFam | Somatic embryogenesis receptor kinase 1 | 27 | 214 | - | - | |
Cmu08g0297 | 627 | SUPERFAMILY | Protein kinase-like (PK-like) | 283 | 579 | IPR011009 | - | |
Cmu08g0297 | 627 | FunFam | Somatic embryogenesis receptor-like kinase 1 | 381 | 598 | - | - | |
Cmu08g0297 | 627 | Pfam | Protein tyrosine and serine/threonine kinase | 307 | 578 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu08g0297 | 627 | Gene3D | Transferase(Phosphotransferase) domain 1 | 381 | 598 | - | - | |
Cmu08g0297 | 627 | SUPERFAMILY | L domain-like | 31 | 195 | - | - | |
Cmu08g0297 | 627 | Gene3D | Phosphorylase Kinase; domain 1 | 273 | 380 | - | - | |
Cmu08g0297 | 627 | SMART | serkin_6 | 304 | 578 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu08g0297 | 627 | ProSiteProfiles | Protein kinase domain profile. | 304 | 591 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu08g0297 | 627 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 13 | 627 | - | - | |
Cmu08g0297 | 627 | CDD | STK_BAK1_like | 310 | 581 | - | - | |
Cmu08g0297 | 627 | Pfam | Leucine Rich Repeat | 96 | 118 | IPR001611 | GO:0005515(InterPro) | |
Cmu08g0297 | 627 | Pfam | Leucine Rich Repeat | 120 | 142 | IPR001611 | GO:0005515(InterPro) | |
Cmu08g0297 | 627 | Pfam | Leucine Rich Repeat | 144 | 165 | IPR001611 | GO:0005515(InterPro) | |
Cmu08g0297 | 627 | Pfam | Leucine Rich Repeat | 168 | 186 | IPR001611 | GO:0005515(InterPro) | |
Cmu08g0297 | 627 | ProSitePatterns | Protein kinases ATP-binding region signature. | 310 | 332 | IPR017441 | GO:0005524(InterPro) | |
Cmu08g0297 | 627 | Gene3D | Ribonuclease Inhibitor | 27 | 214 | IPR032675 | - | |
Cmu08g0297 | 627 | FunFam | Somatic embryogenesis receptor kinase 1 | 273 | 380 | - | - | |
Cmu08g0297 | 627 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 427 | 439 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g1403 | Cmu-Chr1:27552775 | Cmu08g0297 | Cmu-Chr8:7323144 | 1.50E-74 | dispersed | |
Cmu06g0176 | Cmu-Chr6:1824000 | Cmu08g0297 | Cmu-Chr8:7323144 | 1.30E-30 | dispersed | |
Cmu07g0931 | Cmu-Chr7:23513581 | Cmu08g0297 | Cmu-Chr8:7323144 | 4.90E-243 | dispersed | |
Cmu07g1698 | Cmu-Chr7:32262047 | Cmu08g0297 | Cmu-Chr8:7323144 | 9.00E-125 | dispersed | |
Cmu08g0297 | Cmu-Chr8:7323144 | Cmu10g1709 | Cmu-Chr10:19803611 | 1.70E-227 | dispersed | |
Cmu08g0297 | Cmu-Chr8:7323144 | Cmu07g1697 | Cmu-Chr7:32242753 | 3.30E-138 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75701 | PF00069 | Pkinase | 9.60E-45 | CL0016 | Cmu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu08g0297 | K13418 | - | csv:101208695 | 1139.41 |