Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0297 ATGGAGATGGAGCAGTTCAAGGTTTTGGCTCTGGGTTTCGTCTCTTTGATCTTGCTGGTTCCTCCACTATGGCGCGTTTCTGCTAACATGGAAGGTGATGCTTTGCATAGCCTAAGAACCAGCTTGCAGGATCCTAACAATGTCTTGCAGAGTTGGGATCCCACTCTCGTCAATCCCTGTACATGGTTTCATGTTACATGCAATAATGATAATAGTGTCATAAGAGTTGATCTTGGAAATGCAGCTTTATCAGGCACACTTGTTCCACAGCTTGGCTTGCTAAAAAATTTGCAGTATCTAGAGCTCTACAGTAATAACATAAGTGGAGTAATTCCGAATGATCTGGGGAATCTGACTAGTTTGGTGAGCTTAGATCTTTATTTGAACAGATTTTCGGGTCCAATTCCAGACACATTGGGCAAGCTGTCAAAACTACGATTTCTCCGACTGAACAACAACAGCTTATCAGGCCCCATTCCTATGTCATTGACTAATATTTCATCCCTTCAAGTGTTGGATCTATCAAATAACCATCTCTCAGGCCCGGTTCCAGATAACGGTTCCTTCTCCTTATTCACCCCCATCAGTTTTGCCAACAACTTGGATCTTTGTGGCCCTGTTACTGGCCGTCCTTGCCCTGGATCTCCTCCATTTTCTCCTCCTCCACCATTTGTTCCACCGCCACCTATATCTTCACCAGGAGGGAATAGTGCTACTGGAGCTATTGCTGGTGGAGTTGCTGCAGGTGCTGCTTTACTTTTTGCAGCTCCAGCAATTGCATTTGCATGGTGGCGTCGTAGGAAACCCCAAGAAGTTTTCTTTGATGTTCCTGCCGAAGAGGATCCTGAAGTGCATCTGGGACAGCTTAAAAGATTTTCACTAAGAGAACTACAAGTGGCAACTGATAGTTTTAGTAACAAGAACATACTTGGTAGGGGTGGATTTGGCAAAGTCTATAAAGGTCGATTGGCAGACGGTTCTTTAGTAGCTGTAAAAAGACTTAAGGAAGAACGTACACCAGGTGGAGAGCTGCAGTTTCAAACAGAAGTAGAGATGATCAGCATGGCTGTGCATCGGAACCTGCTACGGCTACGTGGGTTTTGCATGACGCCAACTGAACGACTTCTTGTTTACCCCTACATGGCCAATGGAAGTGTTGCGTCTTGCTTAAGAGAACGACCACCATCCCAACCACCTCTTGATTGGAGAACGAGAAAGCGAATTGCATTGGGATCTGCGAGAGGGCTGTCTTATTTGCATGATCACTGTGATCCGAAGATTATTCATCGCGATGTAAAAGCTGCAAATATTTTGCTGGATGAGGAGTTTGAAGCTGTTGTAGGGGACTTTGGGTTGGCCAAACTTATGGATTACAAAGATACTCATGTCACCACTGCAGTACGTGGTACGATTGGACATATAGCTCCTGAGTACCTTTCCACTGGGAAATCTTCTGAGAAAACAGATGTTTTCGGGTATGGTATCATGCTTTTAGAGCTTATCACTGGTCAAAGGGCTTTCGATTTGGCTCGACTTGCCAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTCCTGAAAGAGAAGAAGTTAGAGATGCTGGTTGACCCTGATCTTCAGAATAATTATGTAGAATCTGAGGTAGAACAGTTGATTCAAGTTGCCTTACTTTGCACACAAGGCTCCCCGATGGACCGACCGAAGATGTCCGAGGTGGTGAGAATGCTTGAAGGTGATGGATTGGCAGAAAGATGGGATGAGTGGCAAAAGGTGGAGATCCTTCGGCAAGAAATCGATCTATCGCCCCATCCAAATTCCGATTGGATTGTTGATTCAACTGAAAATCTACATGCAGTTGAGCTGTCGGGTCCAAGATGA 1884 44.96 MEMEQFKVLALGFVSLILLVPPLWRVSANMEGDALHSLRTSLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGTLVPQLGLLKNLQYLELYSNNISGVIPNDLGNLTSLVSLDLYLNRFSGPIPDTLGKLSKLRFLRLNNNSLSGPIPMSLTNISSLQVLDLSNNHLSGPVPDNGSFSLFTPISFANNLDLCGPVTGRPCPGSPPFSPPPPFVPPPPISSPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEVFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPLDWRTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYVESEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEILRQEIDLSPHPNSDWIVDSTENLHAVELSGPR 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7323144 7332623 + CmPI595203_08g002970.1 Cmu08g0297 421783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0297 627 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Cmu08g0297 627 FunFam Somatic embryogenesis receptor kinase 1 27 214 - -
Cmu08g0297 627 SUPERFAMILY Protein kinase-like (PK-like) 283 579 IPR011009 -
Cmu08g0297 627 FunFam Somatic embryogenesis receptor-like kinase 1 381 598 - -
Cmu08g0297 627 Pfam Protein tyrosine and serine/threonine kinase 307 578 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu08g0297 627 Gene3D Transferase(Phosphotransferase) domain 1 381 598 - -
Cmu08g0297 627 SUPERFAMILY L domain-like 31 195 - -
Cmu08g0297 627 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
Cmu08g0297 627 SMART serkin_6 304 578 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g0297 627 ProSiteProfiles Protein kinase domain profile. 304 591 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g0297 627 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 627 - -
Cmu08g0297 627 CDD STK_BAK1_like 310 581 - -
Cmu08g0297 627 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515(InterPro)
Cmu08g0297 627 Pfam Leucine Rich Repeat 120 142 IPR001611 GO:0005515(InterPro)
Cmu08g0297 627 Pfam Leucine Rich Repeat 144 165 IPR001611 GO:0005515(InterPro)
Cmu08g0297 627 Pfam Leucine Rich Repeat 168 186 IPR001611 GO:0005515(InterPro)
Cmu08g0297 627 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524(InterPro)
Cmu08g0297 627 Gene3D Ribonuclease Inhibitor 27 214 IPR032675 -
Cmu08g0297 627 FunFam Somatic embryogenesis receptor kinase 1 273 380 - -
Cmu08g0297 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1403 Cmu-Chr1:27552775 Cmu08g0297 Cmu-Chr8:7323144 1.50E-74 dispersed
Cmu06g0176 Cmu-Chr6:1824000 Cmu08g0297 Cmu-Chr8:7323144 1.30E-30 dispersed
Cmu07g0931 Cmu-Chr7:23513581 Cmu08g0297 Cmu-Chr8:7323144 4.90E-243 dispersed
Cmu07g1698 Cmu-Chr7:32262047 Cmu08g0297 Cmu-Chr8:7323144 9.00E-125 dispersed
Cmu08g0297 Cmu-Chr8:7323144 Cmu10g1709 Cmu-Chr10:19803611 1.70E-227 dispersed
Cmu08g0297 Cmu-Chr8:7323144 Cmu07g1697 Cmu-Chr7:32242753 3.30E-138 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75701 PF00069 Pkinase 9.60E-45 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0297 K13418 - csv:101208695 1139.41