Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0328 ATGTCGTTTCGTAGTATAGTTCGTGACGTTAGAGAGGGGTTTGGAAGTTTATCCCGACGTAGTTTTGAGGTGAGACTGCCCGGTCACCAGCGGGGTAAATCTCATGGATCAGTCCATGATTTGCAAGACCAACCTCTGGTAATTCAGAATAGTCGTTGGGCTAGCCTCCCGCCTGAGCTATTGCGGGATGTAGTCATGAGACTGGAGAAGAGTGAGAGTGTGTGGCCTGCTCGCAAACATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCGTGGAGGGAAATGTGCAAAGAGATAGTAAAAAGTCCCGAGTTCTCTGGAAAAATCACCTTCCCTGTCTCTTTAAAACAGCCAGGGACTCGTGATGGAACCATTCAATGCTTCATTAAGAGGGACAAATCTAATTTGACTTATCACCTTTACCTTTGCCTTAGTCCTGCTTTACTTGTTGATAATGGGAAGTTTCTTCTTTCTGCCAAAAGAACGAGGAGAACGACCTGCACCGAATACGTGATCTCCATGGATGCAGATAATATATCAAGATCGAGCAACACCTACATTGGAAAACTACGGTCAAATTTTCTTGGGACCAAGTTCATTATCTATGATACACAACCTCCATACAACAATGCCCAGATTTCCCCACCGGGCCGTAGCCGTAGATTCTACTCGAAGAAAGTTTCCCCAAAAGTCCCAACTGGTAGCTATGAGATTGCTCAAGTCACTTACGAACTGAATGTTCTTGGTACAAGAGGCCCTCGAAAGATGCACTGCACGATGCACTCTATCCCTGCCTCGTCTCTTGAGGCCGGTGGTACTGTTCCGGGCCAGCCCGAGGTTGTCCCTCGACTCCTTGGGGATTCATTTCGGAGTATATCATTCTCCAAGTCTGTCTTCAATTCTACAGAGTTCAGTAGTTCCCGTTTCTCTGACATTGTCGGCTCTCAAGACGAAGATCAAATGGGGAAGGAGAGACCATTGATTCTTAGGAACAAGCCACCGCGGTGGCATGAGCAGTTGCAGTGTTGGTGCCTTAATTTCCGGGGGCGAGTGACCATTGCTTCTGTCAAGAACTTTCAACTGATAGCTGCTACAGAGCCATCTTCTTCCACAGCTACAAACCAATCACAGCCAAACCAACACGCCCAATCTTCCCAATCTGACCATGACAAGATCATTCTTCAATTTGGGAAGGTTGGGAAGGACATGTTTACGATGGATTACCGATATCCATTGTCAGCATTTCAAGCCTTTGCAATCTGTTTGAGTAGCTTTGACACCAAATTGGCTTGTGAATAA 1296 46.37 MSFRSIVRDVREGFGSLSRRSFEVRLPGHQRGKSHGSVHDLQDQPLVIQNSRWASLPPELLRDVVMRLEKSESVWPARKHVVACAAVCRSWREMCKEIVKSPEFSGKITFPVSLKQPGTRDGTIQCFIKRDKSNLTYHLYLCLSPALLVDNGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGRSRRFYSKKVSPKVPTGSYEIAQVTYELNVLGTRGPRKMHCTMHSIPASSLEAGGTVPGQPEVVPRLLGDSFRSISFSKSVFNSTEFSSSRFSDIVGSQDEDQMGKERPLILRNKPPRWHEQLQCWCLNFRGRVTIASVKNFQLIAATEPSSSTATNQSQPNQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8854832 8857491 - CmPI595203_08g003280.1 Cmu08g0328 421814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0328 431 CDD F-box_AtTLP-like 53 97 - -
Cmu08g0328 431 MobiDBLite consensus disorder prediction 367 387 - -
Cmu08g0328 431 Gene3D - 48 101 - -
Cmu08g0328 431 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Cmu08g0328 431 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cmu08g0328 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Cmu08g0328 431 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cmu08g0328 431 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Cmu08g0328 431 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cmu08g0328 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
Cmu08g0328 431 FunFam Tubby-like F-box protein 110 431 - -
Cmu08g0328 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
Cmu08g0328 431 Gene3D Tubby Protein; Chain A 112 425 IPR025659 -
Cmu08g0328 431 PANTHER TUBBY-RELATED 47 430 - -
Cmu08g0328 431 FunFam Tubby-like F-box protein 48 101 - -
Cmu08g0328 431 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515(InterPro)
Cmu08g0328 431 SUPERFAMILY Tubby C-terminal domain-like 102 431 IPR025659 -
Cmu08g0328 431 Pfam Tub family 114 426 IPR000007 -
Cmu08g0328 431 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Cmu08g0328 431 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1098 Cmu-Chr5:10393178 Cmu08g0328 Cmu-Chr8:8854832 2.30E-191 dispersed
Cmu06g0529 Cmu-Chr6:5860565 Cmu08g0328 Cmu-Chr8:8854832 1.90E-109 dispersed
Cmu08g0328 Cmu-Chr8:8854832 Cmu08g0647 Cmu-Chr8:18687510 2.00E-182 dispersed
Cmu08g0328 Cmu-Chr8:8854832 Cmu05g0635 Cmu-Chr5:5459149 3.90E-122 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6623 PF01167 Tub 1.20E-118 CL0395 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0328 K19600 - csv:101206041 845.884