Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0328 ATGTCGTTTCGTAGTATAGTTCGTGACGTTAGAGAGGGGTTTGGAAGTTTATCCCGACGTAGTTTTGAGGTGAGACTGCCCGGTCACCAGCGGGGTAAATCTCATGGATCAGTCCATGATTTGCAAGACCAACCTCTGGTAATTCAGAATAGTCGTTGGGCTAGCCTCCCGCCTGAGCTATTGCGGGATGTAGTCATGAGACTGGAGAAGAGTGAGAGTGTGTGGCCTGCTCGCAAACATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCGTGGAGGGAAATGTGCAAAGAGATAGTAAAAAGTCCCGAGTTCTCTGGAAAAATCACCTTCCCTGTCTCTTTAAAACAGCCAGGGACTCGTGATGGAACCATTCAATGCTTCATTAAGAGGGACAAATCTAATTTGACTTATCACCTTTACCTTTGCCTTAGTCCTGCTTTACTTGTTGATAATGGGAAGTTTCTTCTTTCTGCCAAAAGAACGAGGAGAACGACCTGCACCGAATACGTGATCTCCATGGATGCAGATAATATATCAAGATCGAGCAACACCTACATTGGAAAACTACGGTCAAATTTTCTTGGGACCAAGTTCATTATCTATGATACACAACCTCCATACAACAATGCCCAGATTTCCCCACCGGGCCGTAGCCGTAGATTCTACTCGAAGAAAGTTTCCCCAAAAGTCCCAACTGGTAGCTATGAGATTGCTCAAGTCACTTACGAACTGAATGTTCTTGGTACAAGAGGCCCTCGAAAGATGCACTGCACGATGCACTCTATCCCTGCCTCGTCTCTTGAGGCCGGTGGTACTGTTCCGGGCCAGCCCGAGGTTGTCCCTCGACTCCTTGGGGATTCATTTCGGAGTATATCATTCTCCAAGTCTGTCTTCAATTCTACAGAGTTCAGTAGTTCCCGTTTCTCTGACATTGTCGGCTCTCAAGACGAAGATCAAATGGGGAAGGAGAGACCATTGATTCTTAGGAACAAGCCACCGCGGTGGCATGAGCAGTTGCAGTGTTGGTGCCTTAATTTCCGGGGGCGAGTGACCATTGCTTCTGTCAAGAACTTTCAACTGATAGCTGCTACAGAGCCATCTTCTTCCACAGCTACAAACCAATCACAGCCAAACCAACACGCCCAATCTTCCCAATCTGACCATGACAAGATCATTCTTCAATTTGGGAAGGTTGGGAAGGACATGTTTACGATGGATTACCGATATCCATTGTCAGCATTTCAAGCCTTTGCAATCTGTTTGAGTAGCTTTGACACCAAATTGGCTTGTGAATAA 1296 46.37 MSFRSIVRDVREGFGSLSRRSFEVRLPGHQRGKSHGSVHDLQDQPLVIQNSRWASLPPELLRDVVMRLEKSESVWPARKHVVACAAVCRSWREMCKEIVKSPEFSGKITFPVSLKQPGTRDGTIQCFIKRDKSNLTYHLYLCLSPALLVDNGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGRSRRFYSKKVSPKVPTGSYEIAQVTYELNVLGTRGPRKMHCTMHSIPASSLEAGGTVPGQPEVVPRLLGDSFRSISFSKSVFNSTEFSSSRFSDIVGSQDEDQMGKERPLILRNKPPRWHEQLQCWCLNFRGRVTIASVKNFQLIAATEPSSSTATNQSQPNQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8854832 8857491 - CmPI595203_08g003280.1 Cmu08g0328 421814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0328 431 CDD F-box_AtTLP-like 53 97 - -
Cmu08g0328 431 MobiDBLite consensus disorder prediction 367 387 - -
Cmu08g0328 431 Gene3D - 48 101 - -
Cmu08g0328 431 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Cmu08g0328 431 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cmu08g0328 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Cmu08g0328 431 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cmu08g0328 431 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Cmu08g0328 431 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cmu08g0328 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
Cmu08g0328 431 FunFam Tubby-like F-box protein 110 431 - -
Cmu08g0328 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
Cmu08g0328 431 Gene3D Tubby Protein; Chain A 112 425 IPR025659 -
Cmu08g0328 431 PANTHER TUBBY-RELATED 47 430 - -
Cmu08g0328 431 FunFam Tubby-like F-box protein 48 101 - -
Cmu08g0328 431 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515(InterPro)
Cmu08g0328 431 SUPERFAMILY Tubby C-terminal domain-like 102 431 IPR025659 -
Cmu08g0328 431 Pfam Tub family 114 426 IPR000007 -
Cmu08g0328 431 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Cmu08g0328 431 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0328 K19600 - - csv:101206041 845.884
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1098 Cmu-Chr5:10393178 Cmu08g0328 Cmu-Chr8:8854832 2.30E-191 dispersed
Cmu06g0529 Cmu-Chr6:5860565 Cmu08g0328 Cmu-Chr8:8854832 1.90E-109 dispersed
Cmu08g0328 Cmu-Chr8:8854832 Cmu08g0647 Cmu-Chr8:18687510 2.00E-182 dispersed
Cmu08g0328 Cmu-Chr8:8854832 Cmu05g0635 Cmu-Chr5:5459149 3.90E-122 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu08g0328 . 1 431 TUB Transcription Factor Family AT1G76900 72.7 6.9e-178 620.5
Cmu05g1098 . 1 428 TUB Transcription Factor Family AT1G76900 69.9 2.6e-169 592.0
Cmu08g0647 . 6 406 TUB Transcription Factor Family AT1G76900 65.9 1.0e-157 553.5
Cmu05g0635 . 13 387 TUB Transcription Factor Family AT1G76900 50.7 3.3e-111 399.1
Cmu05g1098 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 8.1e-102 367.1
Cmu08g0328 . 173 431 TUB Transcription Factor Family AT1G25280 67.7 4.8e-94 341.3
Cmu08g0647 . 149 406 TUB Transcription Factor Family AT1G25280 70.0 2.0e-92 335.9
Cmu05g0635 . 154 387 TUB Transcription Factor Family AT1G25280 53.6 4.8e-70 261.5
Cmu05g1935 . 309 536 TUB Transcription Factor Family AT1G25280 53.8 1.4e-66 250.0
Cmu01g1898 . 176 413 TUB Transcription Factor Family AT1G25280 51.3 1.1e-63 240.4
Cmu06g0529 . 154 362 TUB Transcription Factor Family AT1G25280 50.2 2.4e-53 206.1
Cmu05g0635 . 98 387 TUB Transcription Factor Family AT5G18680 62.4 1.5e-96 349.7
Cmu06g0529 . 98 362 TUB Transcription Factor Family AT5G18680 61.0 1.4e-86 316.6
Cmu08g0328 . 112 431 TUB Transcription Factor Family AT5G18680 52.8 3.8e-84 308.5
Cmu08g0647 . 86 406 TUB Transcription Factor Family AT5G18680 51.2 1.9e-83 306.2
Cmu05g1098 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 9.4e-83 303.9
Cmu05g1935 . 245 536 TUB Transcription Factor Family AT5G18680 51.9 3.4e-77 285.4
Cmu01g1898 . 1 413 TUB Transcription Factor Family AT2G18280 61.0 3.6e-138 488.4
Cmu05g1935 . 131 536 TUB Transcription Factor Family AT2G18280 59.0 4.5e-125 444.9
Cmu05g1098 . 1 428 TUB Transcription Factor Family AT2G18280 52.9 3.7e-119 425.2
Cmu08g0328 . 1 431 TUB Transcription Factor Family AT2G18280 52.0 2.2e-116 416.0
Cmu05g0635 . 1 387 TUB Transcription Factor Family AT2G18280 53.8 8.5e-116 414.1
Cmu08g0647 . 7 406 TUB Transcription Factor Family AT2G18280 50.7 3.7e-111 398.7
Cmu06g0529 . 1 362 TUB Transcription Factor Family AT2G18280 51.3 6.6e-100 361.3
Cmu05g0635 . 1 387 TUB Transcription Factor Family AT2G47900 68.7 1.5e-160 562.8
Cmu06g0529 . 1 362 TUB Transcription Factor Family AT2G47900 67.3 2.1e-146 515.8
Cmu08g0328 . 1 431 TUB Transcription Factor Family AT2G47900 55.3 1.0e-132 470.3
Cmu05g1098 . 1 428 TUB Transcription Factor Family AT2G47900 56.6 9.7e-131 463.8
Cmu08g0647 . 9 406 TUB Transcription Factor Family AT2G47900 57.8 6.1e-125 444.5
Cmu05g1935 . 140 536 TUB Transcription Factor Family AT2G47900 55.4 4.7e-117 418.3
Cmu01g1898 . 1 413 TUB Transcription Factor Family AT2G47900 53.4 6.3e-114 407.9
Cmu07g1018 . 53 383 TUB Transcription Factor Family AT2G47900 52.1 2.3e-100 362.8
Cmu09g0329 . 82 297 TUB Transcription Factor Family AT1G16070 61.8 3.0e-73 272.3
Cmu08g0328 . 67 431 TUB Transcription Factor Family AT1G43640 70.2 1.3e-147 519.6
Cmu05g1098 . 66 428 TUB Transcription Factor Family AT1G43640 68.0 1.1e-146 516.5
Cmu08g0647 . 39 406 TUB Transcription Factor Family AT1G43640 65.8 3.2e-141 498.4
Cmu05g0635 . 49 387 TUB Transcription Factor Family AT1G43640 53.4 2.8e-105 379.0
Cmu05g1935 . 198 536 TUB Transcription Factor Family AT1G43640 50.1 2.3e-99 359.4
Cmu06g0529 . 49 362 TUB Transcription Factor Family AT1G43640 50.7 2.5e-93 339.3
Cmu05g1935 . 164 536 TUB Transcription Factor Family AT1G47270 64.4 1.1e-134 476.9
Cmu01g1898 . 33 413 TUB Transcription Factor Family AT1G47270 56.7 3.0e-121 432.2
Cmu05g1098 . 1 428 TUB Transcription Factor Family AT1G47270 52.1 1.2e-114 410.2
Cmu08g0328 . 30 431 TUB Transcription Factor Family AT1G47270 51.6 1.9e-112 402.9
Cmu08g0647 . 25 406 TUB Transcription Factor Family AT1G47270 55.5 7.4e-112 401.0
Cmu05g0635 . 1 387 TUB Transcription Factor Family AT1G47270 50.5 2.5e-104 375.9
Cmu07g1018 . 50 383 TUB Transcription Factor Family AT1G53320 76.8 9.3e-152 533.5
Cmu05g0635 . 98 387 TUB Transcription Factor Family AT3G06380 63.8 5.0e-97 351.3
Cmu05g1098 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 4.5e-82 301.6
Cmu06g0529 . 98 362 TUB Transcription Factor Family AT3G06380 60.2 4.5e-82 301.6
Cmu08g0647 . 90 406 TUB Transcription Factor Family AT3G06380 52.1 6.5e-81 297.7
Cmu08g0328 . 116 431 TUB Transcription Factor Family AT3G06380 50.3 4.2e-80 295.0
Cmu05g1935 . 249 536 TUB Transcription Factor Family AT3G06380 52.9 3.6e-79 292.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6623 PF01167 Tub 1.20E-118 CL0395 Cmu TF