Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0331 GTCAATGGGATCCATGTGAGGGGTAGTTTCGTCATTTCATCACCGCCTTGCCAAAAAAGAAACCTCCATTTCAAGGAGGAGCGTCCCCTCCCAATTAGTGTTATTATTATTCTCTCTATGCTTGGGGACTCCACTACTTCCGTCTTGGGCGGCGGCGCCGGAGGAGGAGAGGCCGCTGTGCCGGAGACGACTCATCATCACGATGGACTGATGGGGGACATGGAGGAGAATAATAACAATTCTGGTGAGGATGAGAGAGGGAGAAGCGGAGGTGGCGGCGGAGACGACGGTGACCGGAGCTTCGGCGGAAACCGGTGGCCGAGACAAGAAACTTTAGCTCTCTTGAAAATACGGTCAGAAATGGACGTGGCTTTTCGAGATGCAAGCGTTAAAGGCCCTTTGTGGGAACAAATTTCCAGGAAATTGGGGGAGCTTGGGTATCATCGAAGTGCAAAAAAATGCAAGGAGAAATTTGAGAATGTTTACAAATATCACAAAAGAACTAAAGAAGTTAGAAGTGGGAAACCAGATAGCAAAACTTATAAGTTCTTTGAACAATTAGAAGCTCTTGAGAATCACCCTCCTCTTAATTTCCACTCCCATTTGTCTAAACCAACTCCTCCGCCGCAGCCGCCACCGCCTACCGCCGTCATTTCCCCCATTCCTTCAAGTACTGTTCCATCCACCACTCTACCTCACTTGATGAACATATCATTCTCTCAACCAAACCCCACAATTCATCTCCCATCTCCTCCGCCCCCTCCTGCTCCGTTGCCATTGAATAACCCTACAAGTTTACCCACCACCGTCCCTCCCTCCATGCCGTTTCAAATCAATGTGCCTTCGGCGGGAGTGGGGTTTCAGAGCATTGAAGCGGATCTCATCTCGAACTCGACGTCTGATGATATCAATTCGTCAACGTCATCAGATGAGGCGTCGAGAAAGAGGAGGAGGAAGAGGAAATGGAAGGACTTTTTTGAGAGATTGATGAAGGAAGTGATTCAAAAGCAAGAGGAAATGCAAAAGAGATTCTTGGAAGCAATTGAGAAGAGGGAGCAAGAGAGAGTTGTGAGAGAAGAAGCTTGGAGGATGCAAGAGATGGCCAAAATCAATAGAGAAAGAGAGATTTTAGCTCAAGAAAGATCAATGGCAGCTGCAAAAGATGCTGCGATTACATCGTTCCTTCAAAAAATAACTGAATCCCAACACAACAATAACAACAACAACGCATCACAACCGTCACCACCGCCCCCGCCACCGCCACCGTCCCAACAACAACAACAACCAATTCCAACGTCAAATCCAACACCAGTCGTGCAACCTTCACCGCGACCGCCACCTCCGGCCGCACCACAAGCTTCCACATTGCAAGTTGTTGTTCCCAATTCCACCCCACAAAAAGTGGGGAACAATAATGAATTGTTGCAAATGGAAATCATGAAAATGGATCATAATGGTGGGGAGAATTATAGCATTAGCCCAGCTTCAAGCTCATCAAGATGGCCAAAAGTGGAAGTTCAAGCACTGATCAAATTGAGAACAAACCTTGAAACCAAATATCAAGAGAATGGGCCAAAAGGGCCTTTATGGGAAGAGATATCATCAGCCATGAAGAAACTTGGGTACAATAGAAATGCAAAGAGGTGCAAAGAGAAGTGGGAAAACATAAACAAATACTTCAAGAAAGTGAAGGAAAGTAGAAAAGCAAGGCCTGAAGATTCCAAGACTTGCCCTTATTTTCACCAGCTTGATGCTTTGTATAGGGAGAAGAGCAACAACACGAACAACAACATAATCGGATCCTCGACGCAAATTATGCAGCATCAACAGCAGCCATTGATGGTTCGTCCCGAGCAACAATGGCCTCCCCAACAAGAGATCACCCGCCCCGACTCAGGAAACGAAGAGATGGAGAGTGAACCAATGGATCGTGATGATAAAGACGACGATGAAGAAGATGAAGAGGAAGAGGACGAAGGTGGAGGGAACTATGAGATTGTGGCAAGCAAACCAGCTTCAGTGAGTGCTGCAGAGTGA 2037 46.83 VNGIHVRGSFVISSPPCQKRNLHFKEERPLPISVIIILSMLGDSTTSVLGGGAGGGEAAVPETTHHHDGLMGDMEENNNNSGEDERGRSGGGGGDDGDRSFGGNRWPRQETLALLKIRSEMDVAFRDASVKGPLWEQISRKLGELGYHRSAKKCKEKFENVYKYHKRTKEVRSGKPDSKTYKFFEQLEALENHPPLNFHSHLSKPTPPPQPPPPTAVISPIPSSTVPSTTLPHLMNISFSQPNPTIHLPSPPPPPAPLPLNNPTSLPTTVPPSMPFQINVPSAGVGFQSIEADLISNSTSDDINSSTSSDEASRKRRRKRKWKDFFERLMKEVIQKQEEMQKRFLEAIEKREQERVVREEAWRMQEMAKINREREILAQERSMAAAKDAAITSFLQKITESQHNNNNNNASQPSPPPPPPPPSQQQQQPIPTSNPTPVVQPSPRPPPPAAPQASTLQVVVPNSTPQKVGNNNELLQMEIMKMDHNGGENYSISPASSSSRWPKVEVQALIKLRTNLETKYQENGPKGPLWEEISSAMKKLGYNRNAKRCKEKWENINKYFKKVKESRKARPEDSKTCPYFHQLDALYREKSNNTNNNIIGSSTQIMQHQQQPLMVRPEQQWPPQQEITRPDSGNEEMESEPMDRDDKDDDEEDEEEEDEGGGNYEIVASKPASVSAAE 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9317585 9321060 + CmPI595203_08g003310.1 Cmu08g0331 421817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0331 678 CDD GT1 500 564 - -
Cmu08g0331 678 MobiDBLite consensus disorder prediction 61 93 - -
Cmu08g0331 678 MobiDBLite consensus disorder prediction 195 277 - -
Cmu08g0331 678 CDD GT1 104 169 - -
Cmu08g0331 678 FunFam Trihelix transcription factor GT-2 501 562 - -
Cmu08g0331 678 Gene3D - 501 562 - -
Cmu08g0331 678 Gene3D - 106 167 - -
Cmu08g0331 678 Pfam Myb/SANT-like DNA-binding domain 499 586 IPR044822 -
Cmu08g0331 678 Pfam Myb/SANT-like DNA-binding domain 104 190 IPR044822 -
Cmu08g0331 678 FunFam Trihelix transcription factor GT-2 106 167 - -
Cmu08g0331 678 MobiDBLite consensus disorder prediction 201 220 - -
Cmu08g0331 678 Coils Coil 323 354 - -
Cmu08g0331 678 MobiDBLite consensus disorder prediction 605 630 - -
Cmu08g0331 678 SMART sant 102 164 IPR001005 -
Cmu08g0331 678 SMART sant 497 559 IPR001005 -
Cmu08g0331 678 ProSiteProfiles Myb-like domain profile. 493 557 IPR001005 -
Cmu08g0331 678 MobiDBLite consensus disorder prediction 221 244 - -
Cmu08g0331 678 PRINTS Proline rich extensin signature 254 275 - -
Cmu08g0331 678 PRINTS Proline rich extensin signature 242 254 - -
Cmu08g0331 678 PRINTS Proline rich extensin signature 206 222 - -
Cmu08g0331 678 PRINTS Proline rich extensin signature 413 438 - -
Cmu08g0331 678 MobiDBLite consensus disorder prediction 411 452 - -
Cmu08g0331 678 MobiDBLite consensus disorder prediction 638 662 - -
Cmu08g0331 678 ProSiteProfiles Myb-like domain profile. 104 162 IPR001005 -
Cmu08g0331 678 MobiDBLite consensus disorder prediction 52 105 - -
Cmu08g0331 678 MobiDBLite consensus disorder prediction 402 455 - -
Cmu08g0331 678 MobiDBLite consensus disorder prediction 245 270 - -
Cmu08g0331 678 PANTHER FI21293P1 77 648 - -
Cmu08g0331 678 MobiDBLite consensus disorder prediction 298 319 - -
Cmu08g0331 678 MobiDBLite consensus disorder prediction 605 678 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0116 Cmu-Chr1:1013809 Cmu08g0331 Cmu-Chr8:9317585 2.10E-93 dispersed
Cmu02g0072 Cmu-Chr2:739814 Cmu08g0331 Cmu-Chr8:9317585 3.80E-97 dispersed
Cmu06g0962 Cmu-Chr6:14212003 Cmu08g0331 Cmu-Chr8:9317585 5.60E-34 dispersed
Cmu08g0331 Cmu-Chr8:9317585 Cmu10g2652 Cmu-Chr10:33339498 4.80E-34 dispersed
Cmu08g0331 Cmu-Chr8:9317585 Cmu08g0333 Cmu-Chr8:9462332 1.50E-88 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6624 PF13837 Myb_DNA-bind_4 3.20E-21 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0331 - - - 0.0