Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu08g0331 | GTCAATGGGATCCATGTGAGGGGTAGTTTCGTCATTTCATCACCGCCTTGCCAAAAAAGAAACCTCCATTTCAAGGAGGAGCGTCCCCTCCCAATTAGTGTTATTATTATTCTCTCTATGCTTGGGGACTCCACTACTTCCGTCTTGGGCGGCGGCGCCGGAGGAGGAGAGGCCGCTGTGCCGGAGACGACTCATCATCACGATGGACTGATGGGGGACATGGAGGAGAATAATAACAATTCTGGTGAGGATGAGAGAGGGAGAAGCGGAGGTGGCGGCGGAGACGACGGTGACCGGAGCTTCGGCGGAAACCGGTGGCCGAGACAAGAAACTTTAGCTCTCTTGAAAATACGGTCAGAAATGGACGTGGCTTTTCGAGATGCAAGCGTTAAAGGCCCTTTGTGGGAACAAATTTCCAGGAAATTGGGGGAGCTTGGGTATCATCGAAGTGCAAAAAAATGCAAGGAGAAATTTGAGAATGTTTACAAATATCACAAAAGAACTAAAGAAGTTAGAAGTGGGAAACCAGATAGCAAAACTTATAAGTTCTTTGAACAATTAGAAGCTCTTGAGAATCACCCTCCTCTTAATTTCCACTCCCATTTGTCTAAACCAACTCCTCCGCCGCAGCCGCCACCGCCTACCGCCGTCATTTCCCCCATTCCTTCAAGTACTGTTCCATCCACCACTCTACCTCACTTGATGAACATATCATTCTCTCAACCAAACCCCACAATTCATCTCCCATCTCCTCCGCCCCCTCCTGCTCCGTTGCCATTGAATAACCCTACAAGTTTACCCACCACCGTCCCTCCCTCCATGCCGTTTCAAATCAATGTGCCTTCGGCGGGAGTGGGGTTTCAGAGCATTGAAGCGGATCTCATCTCGAACTCGACGTCTGATGATATCAATTCGTCAACGTCATCAGATGAGGCGTCGAGAAAGAGGAGGAGGAAGAGGAAATGGAAGGACTTTTTTGAGAGATTGATGAAGGAAGTGATTCAAAAGCAAGAGGAAATGCAAAAGAGATTCTTGGAAGCAATTGAGAAGAGGGAGCAAGAGAGAGTTGTGAGAGAAGAAGCTTGGAGGATGCAAGAGATGGCCAAAATCAATAGAGAAAGAGAGATTTTAGCTCAAGAAAGATCAATGGCAGCTGCAAAAGATGCTGCGATTACATCGTTCCTTCAAAAAATAACTGAATCCCAACACAACAATAACAACAACAACGCATCACAACCGTCACCACCGCCCCCGCCACCGCCACCGTCCCAACAACAACAACAACCAATTCCAACGTCAAATCCAACACCAGTCGTGCAACCTTCACCGCGACCGCCACCTCCGGCCGCACCACAAGCTTCCACATTGCAAGTTGTTGTTCCCAATTCCACCCCACAAAAAGTGGGGAACAATAATGAATTGTTGCAAATGGAAATCATGAAAATGGATCATAATGGTGGGGAGAATTATAGCATTAGCCCAGCTTCAAGCTCATCAAGATGGCCAAAAGTGGAAGTTCAAGCACTGATCAAATTGAGAACAAACCTTGAAACCAAATATCAAGAGAATGGGCCAAAAGGGCCTTTATGGGAAGAGATATCATCAGCCATGAAGAAACTTGGGTACAATAGAAATGCAAAGAGGTGCAAAGAGAAGTGGGAAAACATAAACAAATACTTCAAGAAAGTGAAGGAAAGTAGAAAAGCAAGGCCTGAAGATTCCAAGACTTGCCCTTATTTTCACCAGCTTGATGCTTTGTATAGGGAGAAGAGCAACAACACGAACAACAACATAATCGGATCCTCGACGCAAATTATGCAGCATCAACAGCAGCCATTGATGGTTCGTCCCGAGCAACAATGGCCTCCCCAACAAGAGATCACCCGCCCCGACTCAGGAAACGAAGAGATGGAGAGTGAACCAATGGATCGTGATGATAAAGACGACGATGAAGAAGATGAAGAGGAAGAGGACGAAGGTGGAGGGAACTATGAGATTGTGGCAAGCAAACCAGCTTCAGTGAGTGCTGCAGAGTGA | 2037 | 46.83 | VNGIHVRGSFVISSPPCQKRNLHFKEERPLPISVIIILSMLGDSTTSVLGGGAGGGEAAVPETTHHHDGLMGDMEENNNNSGEDERGRSGGGGGDDGDRSFGGNRWPRQETLALLKIRSEMDVAFRDASVKGPLWEQISRKLGELGYHRSAKKCKEKFENVYKYHKRTKEVRSGKPDSKTYKFFEQLEALENHPPLNFHSHLSKPTPPPQPPPPTAVISPIPSSTVPSTTLPHLMNISFSQPNPTIHLPSPPPPPAPLPLNNPTSLPTTVPPSMPFQINVPSAGVGFQSIEADLISNSTSDDINSSTSSDEASRKRRRKRKWKDFFERLMKEVIQKQEEMQKRFLEAIEKREQERVVREEAWRMQEMAKINREREILAQERSMAAAKDAAITSFLQKITESQHNNNNNNASQPSPPPPPPPPSQQQQQPIPTSNPTPVVQPSPRPPPPAAPQASTLQVVVPNSTPQKVGNNNELLQMEIMKMDHNGGENYSISPASSSSRWPKVEVQALIKLRTNLETKYQENGPKGPLWEEISSAMKKLGYNRNAKRCKEKWENINKYFKKVKESRKARPEDSKTCPYFHQLDALYREKSNNTNNNIIGSSTQIMQHQQQPLMVRPEQQWPPQQEITRPDSGNEEMESEPMDRDDKDDDEEDEEEEDEGGGNYEIVASKPASVSAAE | 678 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 9317585 | 9321060 | + | CmPI595203_08g003310.1 | Cmu08g0331 | 421817 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu08g0331 | 678 | CDD | GT1 | 500 | 564 | - | - | |
Cmu08g0331 | 678 | MobiDBLite | consensus disorder prediction | 61 | 93 | - | - | |
Cmu08g0331 | 678 | MobiDBLite | consensus disorder prediction | 195 | 277 | - | - | |
Cmu08g0331 | 678 | CDD | GT1 | 104 | 169 | - | - | |
Cmu08g0331 | 678 | FunFam | Trihelix transcription factor GT-2 | 501 | 562 | - | - | |
Cmu08g0331 | 678 | Gene3D | - | 501 | 562 | - | - | |
Cmu08g0331 | 678 | Gene3D | - | 106 | 167 | - | - | |
Cmu08g0331 | 678 | Pfam | Myb/SANT-like DNA-binding domain | 499 | 586 | IPR044822 | - | |
Cmu08g0331 | 678 | Pfam | Myb/SANT-like DNA-binding domain | 104 | 190 | IPR044822 | - | |
Cmu08g0331 | 678 | FunFam | Trihelix transcription factor GT-2 | 106 | 167 | - | - | |
Cmu08g0331 | 678 | MobiDBLite | consensus disorder prediction | 201 | 220 | - | - | |
Cmu08g0331 | 678 | Coils | Coil | 323 | 354 | - | - | |
Cmu08g0331 | 678 | MobiDBLite | consensus disorder prediction | 605 | 630 | - | - | |
Cmu08g0331 | 678 | SMART | sant | 102 | 164 | IPR001005 | - | |
Cmu08g0331 | 678 | SMART | sant | 497 | 559 | IPR001005 | - | |
Cmu08g0331 | 678 | ProSiteProfiles | Myb-like domain profile. | 493 | 557 | IPR001005 | - | |
Cmu08g0331 | 678 | MobiDBLite | consensus disorder prediction | 221 | 244 | - | - | |
Cmu08g0331 | 678 | PRINTS | Proline rich extensin signature | 254 | 275 | - | - | |
Cmu08g0331 | 678 | PRINTS | Proline rich extensin signature | 242 | 254 | - | - | |
Cmu08g0331 | 678 | PRINTS | Proline rich extensin signature | 206 | 222 | - | - | |
Cmu08g0331 | 678 | PRINTS | Proline rich extensin signature | 413 | 438 | - | - | |
Cmu08g0331 | 678 | MobiDBLite | consensus disorder prediction | 411 | 452 | - | - | |
Cmu08g0331 | 678 | MobiDBLite | consensus disorder prediction | 638 | 662 | - | - | |
Cmu08g0331 | 678 | ProSiteProfiles | Myb-like domain profile. | 104 | 162 | IPR001005 | - | |
Cmu08g0331 | 678 | MobiDBLite | consensus disorder prediction | 52 | 105 | - | - | |
Cmu08g0331 | 678 | MobiDBLite | consensus disorder prediction | 402 | 455 | - | - | |
Cmu08g0331 | 678 | MobiDBLite | consensus disorder prediction | 245 | 270 | - | - | |
Cmu08g0331 | 678 | PANTHER | FI21293P1 | 77 | 648 | - | - | |
Cmu08g0331 | 678 | MobiDBLite | consensus disorder prediction | 298 | 319 | - | - | |
Cmu08g0331 | 678 | MobiDBLite | consensus disorder prediction | 605 | 678 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g0116 | Cmu-Chr1:1013809 | Cmu08g0331 | Cmu-Chr8:9317585 | 2.10E-93 | dispersed | |
Cmu02g0072 | Cmu-Chr2:739814 | Cmu08g0331 | Cmu-Chr8:9317585 | 3.80E-97 | dispersed | |
Cmu06g0962 | Cmu-Chr6:14212003 | Cmu08g0331 | Cmu-Chr8:9317585 | 5.60E-34 | dispersed | |
Cmu08g0331 | Cmu-Chr8:9317585 | Cmu10g2652 | Cmu-Chr10:33339498 | 4.80E-34 | dispersed | |
Cmu08g0331 | Cmu-Chr8:9317585 | Cmu08g0333 | Cmu-Chr8:9462332 | 1.50E-88 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6624 | PF13837 | Myb_DNA-bind_4 | 3.20E-21 | CL0123 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu08g0331 | - | - | - | 0.0 |