Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0421 ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCCGTCGACGATGATTGCGATTTCTACAGCGGTGAGATGGACATTGGTATGGGTTATTACAGCGATGACGACGACCCTGATGCTGAGGATTTCGTCGACGATGATACCGATGATTACTTCGAGTCCCGCCGACGCGAGCAAAATTATATCATACTAAATGAATCAGATATAAGACAACGCCAAGAGGACGACATTACAAGAATTTCTTCTGTACTTTCTATATCACGTGTAGCTTCAATTGTCTTGCTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCACGATGAATGGTTTGCTGATGAAGCTCGAGTAAGGAAGCAAGTTGGCTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGAACCTGTGGAATCTGTTTTGAGTCCTATCCAAATAGTAGGATCAAGTCAGCTGCCTGTGGTCATCCTTTCTGTGCCTTCTGCTGGGAAGGCTACATTAGCACATCAATTAATGACGGTCCTGGATGTCTGACGTTGAGATGTCCCGATCCTTCTTGCGGTGCTGTGGTTGATCAAGACATGATTAATTCGTTGGCCTCCAATGAAGACAGGAAGAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACTAAATGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGAAATTATGATGTTTCTTGCTTCTGCACATATGGCTTTTGCTGGAAATGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAATATGAACTGGATATTAGCAAATTCCAAGCCTTGTCCAAAGTGCAAGCGGCCAATCGAGAAAAACCAAGGGTGCATGCACATGACTTGCACACCCCCTTGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCGTGGTCTGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTTGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAAAGAAGAGAAATGGCGAAGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATGGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAATCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGTAGACGAGTTTTGAAATGGACTTATGCATATGGTTATTACCTGCCGGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCTGAGTCTGGATTAGAAAGGCTCCATCAATGTGCCGAAAAGGAATTACTCCAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAACGACTTCCGCACAAAGCTGGCTGGTCTGACCAGTGTTACTCGAAATTACTTTGAGAACCTGGTTAGAGCATTAGAGAATGGGCTCTCAGATGTGAACTCTCATGGAGCAAGCAGCGGCACAACGAGCTCAAAAAGCACAGCAGGAAGTAGTAAAGGAGGGAGAAGTGGACGTGGTAAGGGAGTCAGTCGAACTGCTGGTTCGACCACCAGAAGTAGTGACAGCGCAACTCATTGGTCATGTGAGCACTGTACCTTTGTGAACATTAGATCTGCTACTACGTGCGAGATGTGCCGTCAACGCCATTGA 1779 44.29 MDSEDDLHYSTDVESVDDDCDFYSGEMDIGMGYYSDDDDPDAEDFVDDDTDDYFESRRREQNYIILNESDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADEARVRKQVGLLEAPVVHVLNARERTCGICFESYPNSRIKSAACGHPFCAFCWEGYISTSINDGPGCLTLRCPDPSCGAVVDQDMINSLASNEDRKKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCFCTYGFCWKCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAMADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKSTAGSSKGGRSGRGKGVSRTAGSTTRSSDSATHWSCEHCTFVNIRSATTCEMCRQRH 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13598164 13604930 + CmPI595203_08g004210.1 Cmu08g0421 421907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0421 592 CDD Rcat_RBR_ARI7-like 294 348 - -
Cmu08g0421 592 Pfam IBR domain, a half RING-finger domain 209 271 IPR002867 GO:0008270(InterPro)
Cmu08g0421 592 CDD RING-HC_ARI6-like 137 198 - -
Cmu08g0421 592 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 222 IPR013083 -
Cmu08g0421 592 ProSiteProfiles TRIAD supradomain profile. 136 349 IPR044066 -
Cmu08g0421 592 SMART ibrneu5 209 271 IPR002867 GO:0008270(InterPro)
Cmu08g0421 592 SMART ibrneu5 275 345 IPR002867 GO:0008270(InterPro)
Cmu08g0421 592 FunFam RBR-type E3 ubiquitin transferase 272 522 - -
Cmu08g0421 592 SUPERFAMILY Ran binding protein zinc finger-like 565 590 IPR036443 -
Cmu08g0421 592 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 85 396 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Cmu08g0421 592 MobiDBLite consensus disorder prediction 523 566 - -
Cmu08g0421 592 MobiDBLite consensus disorder prediction 1 15 - -
Cmu08g0421 592 MobiDBLite consensus disorder prediction 552 566 - -
Cmu08g0421 592 Pfam IBR domain 293 333 - -
Cmu08g0421 592 CDD BRcat_RBR_ANKIB1 216 280 - -
Cmu08g0421 592 Gene3D - 267 522 - -
Cmu08g0421 592 SUPERFAMILY RING/U-box 137 218 - -
Cmu08g0421 592 MobiDBLite consensus disorder prediction 1 21 - -
Cmu08g0421 592 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 73 112 IPR048962 -
Cmu08g0421 592 Gene3D - 562 592 - -
Cmu08g0421 592 SMART zf_4 567 591 IPR001876 -
Cmu08g0421 592 Pfam Ariadne domain 358 519 IPR045840 -
Cmu08g0421 592 SUPERFAMILY RING/U-box 290 338 - -
Cmu08g0421 592 Coils Coil 357 377 - -
Cmu08g0421 592 ProSiteProfiles Zinc finger RING-type profile. 140 186 IPR001841 -
Cmu08g0421 592 SUPERFAMILY RING/U-box 210 278 - -
Cmu08g0421 592 ProSitePatterns Zinc finger RanBP2-type signature. 569 588 IPR001876 -
Cmu08g0421 592 MobiDBLite consensus disorder prediction 523 543 - -
Cmu08g0421 592 FunFam RBR-type E3 ubiquitin transferase 134 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0421 K11968 - - csv:101223037 1152.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0421 Cmu-Chr8:13598164 Cmu11g0809 Cmu-Chr11:9803610 7.50E-124 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu09g1717 . 164 589 ARIADNE family AT4G34370 72.4 8.0e-184 640.2
Cmu09g1717 . 58 542 ARIADNE family AT2G16090 77.4 3.6e-225 777.7
Cmu09g1717 . 38 543 ARIADNE family AT3G27710 62.0 4.5e-184 641.3
Cmu09g1717 . 44 522 ARIADNE family AT3G27720 54.5 5.4e-144 508.1
Cmu08g0421 . 61 529 ARIADNE family AT1G05890 74.2 6.8e-218 753.8
Cmu08g0421 . 59 589 ARIADNE family AT1G65430 71.9 3.9e-239 824.3
Cmu11g0809 . 25 465 ARIADNE family AT1G65430 52.4 1.3e-117 420.6
Cmu08g0421 . 60 454 ARIADNE family AT2G31780 58.4 8.3e-144 507.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72