Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0448 ATGAACCTCACTACTCTTGTTTTCTGGATCATCCAGATCTCCATCCATGCAGTTCCAGTTTTTTCTAAAACCAAAGCGCCAGACGTTTCTGCATTGAATGTGATGTTTAGTAGTTTAAATTCACCTTCACAACTCTCTGGTTGGGGTTCAAGTGGGGGTGATCCATGTGGGGATTCTTGGGAAGGGATCCAATGCTCAGGATCATCTGTCACTGAAATAAGTTTATCAGACTTTGGACTAAGTGGTTCAATGGGTTACCAGCTTTCAAATTTGGCAACTGTCACCTACTTTGATTTGAGCAAGAACAACCTCGATGGTGATATCCCCTATCAACTTCCCCCCAATGCAGTTCACATCGATCTTTCTGGGAACAGCTTCACTGGTAGTGTGCCTTATTCAATTTCTCAGATGGCTGATCTTGAATTTTTAAATCTTGGTCATAATAAGCTTAGCAACCAATTGAGTGACATGTTTGGCAAGCTTTCTAAACTCAAAAGGATGGATCTCTCATACAACTCAATTTCAGGAAACTTACCTCAAAGTTTTAAGAAGCTTTCAAGCCTTACCGTATTGCATATACAAGATAATAAATTTTCAGGTTCAATCAATGTTCTTGCTGACCTTCCACTTGATGATTTGAATGTTGCAAATAACAAATTCACCGGATGGATTCCTGAAAGTCTTGAAGCTATAGATAATTTGGAAACTGTAGGAAATTCATGGTCATCTGGGCCAGCACCACCTCCACCACCAGGGACGGTATCTCCGAAAGGGAAGAACTCGAAGAAGGAGGAGTCGAACGGGAAATCGTCGGTGATAAGTGGGTTAGTGATAGCAGGAATAGCCATGGGAGTTTTAGCAATAATAGCAATAGTGATTGGATTTATGTCAAGAAGGCATAAATCCTTCACTCCTTCCCATTTTCTTGATGAAGACACAAGCCAACACAGATCCTTCACTCCACTCACATCCCAGGAACTCCCAAAGGGAGATTTGTACAATAATAATAATAATAATAATGCTAATAATAATACTAATAATGATAGAAAATCCTTCAATTCTGATGCCTCTGTTGACATAAAAGGTCTAAGTGTTGTTAGGCCACCTCCAGCTCCTTCTGATCCTGTTCAATCCTTCAGTGATAATCAATTTGCAAGCCGTTTGAATTCAAGGAGAAGCACTTCCTTTCGTGCCATTTCTTATTCTTTACTTGATTTGCAAACTGCCACTTCCAATTTTGCCCCTGCTCGCCTTCTCGGTGAGGGTACGATCGGACGTGTTTATAAGGCTAAGTATGGAGATGGAAAGGTATTGGCAGTGAAGAAGATAGATTCATCAGTTTTTCAAGGTAGAAGAACAGAGGAGTTTGGTGAAGTAGTTGGAATAATCTCAAAGCTTCATCACACAAACATTACAGAAGTGGTTGGGTTTTGTTCAGAGCAAGGACATCATTTGCTGGTTTATGAATATTTCATGAATGGTTCACTTCATGAGTTTCTTCATATGTCTGATGACTTTAGTAAACCACTCACTTGGAACACTAGAGTCAGAATTGCTTTGGGGACTGCAAGAGCTCTTGAGTATCTTCACGAAGTTTGCTCACCATCCATAATTCACATGAATATCAAGTCCTCTAATATATTGCTTGATGCGGAACTTAATCCTCGTCTCTCAGATTATGGTTTGGCAACATTTTATAAGCATAGAAGCCAAAACCCTGGAGGTGGATATGATGCTCCAGAATGCCTAAAGGGTTCAAGTTATACAATGAAGAGTGATATTTACAGTTTGGGAGTGGTGATGTTGGAGTTGTTGACGGGGCGGATGCCTTATGACTCTGGGAAAGCCAAAGTGGAACAATGTCTAGTAAGATGGGCAACACCACAGCTACATGACATAGATGCATTGGACAAAATGGTGGATCCTGCCTTGCGAGGTTTATATCCTCCAAAATCAGTGTCTAGATTTGCAGATATCATTGCCCTTTGCGTTCAATCAGAGCCTGAATTTAGGCCTCCCATGTCCGAAGTGGTTCAAGCCTTGGTTACTTTGGTTCAACGATCAAGCATGAATATGAGAGATGATCTTGGAAACTCTCGACGAATGGATGATTATGACTATTAA 2124 40.68 MNLTTLVFWIIQISIHAVPVFSKTKAPDVSALNVMFSSLNSPSQLSGWGSSGGDPCGDSWEGIQCSGSSVTEISLSDFGLSGSMGYQLSNLATVTYFDLSKNNLDGDIPYQLPPNAVHIDLSGNSFTGSVPYSISQMADLEFLNLGHNKLSNQLSDMFGKLSKLKRMDLSYNSISGNLPQSFKKLSSLTVLHIQDNKFSGSINVLADLPLDDLNVANNKFTGWIPESLEAIDNLETVGNSWSSGPAPPPPPGTVSPKGKNSKKEESNGKSSVISGLVIAGIAMGVLAIIAIVIGFMSRRHKSFTPSHFLDEDTSQHRSFTPLTSQELPKGDLYNNNNNNNANNNTNNDRKSFNSDASVDIKGLSVVRPPPAPSDPVQSFSDNQFASRLNSRRSTSFRAISYSLLDLQTATSNFAPARLLGEGTIGRVYKAKYGDGKVLAVKKIDSSVFQGRRTEEFGEVVGIISKLHHTNITEVVGFCSEQGHHLLVYEYFMNGSLHEFLHMSDDFSKPLTWNTRVRIALGTARALEYLHEVCSPSIIHMNIKSSNILLDAELNPRLSDYGLATFYKHRSQNPGGGYDAPECLKGSSYTMKSDIYSLGVVMLELLTGRMPYDSGKAKVEQCLVRWATPQLHDIDALDKMVDPALRGLYPPKSVSRFADIIALCVQSEPEFRPPMSEVVQALVTLVQRSSMNMRDDLGNSRRMDDYDY 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14837565 14846581 - CmPI595203_08g004480.1 Cmu08g0448 421934

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0448 707 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 143 686 IPR046959 -
Cmu08g0448 707 Pfam Leucine Rich Repeat 118 137 IPR001611 GO:0005515(InterPro)
Cmu08g0448 707 MobiDBLite consensus disorder prediction 315 353 - -
Cmu08g0448 707 MobiDBLite consensus disorder prediction 238 269 - -
Cmu08g0448 707 Gene3D Phosphorylase Kinase; domain 1 377 490 - -
Cmu08g0448 707 Pfam Protein kinase domain 416 679 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g0448 707 Gene3D Transferase(Phosphotransferase) domain 1 491 704 - -
Cmu08g0448 707 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 25 252 - -
Cmu08g0448 707 SUPERFAMILY Protein kinase-like (PK-like) 393 681 IPR011009 -
Cmu08g0448 707 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 491 695 - -
Cmu08g0448 707 SUPERFAMILY L domain-like 27 236 - -
Cmu08g0448 707 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 379 490 - -
Cmu08g0448 707 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cmu08g0448 707 MobiDBLite consensus disorder prediction 307 383 - -
Cmu08g0448 707 ProSiteProfiles Protein kinase domain profile. 413 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g0448 707 Pfam Leucine rich repeat 156 198 IPR001611 GO:0005515(InterPro)
Cmu08g0448 707 Gene3D Ribonuclease Inhibitor 25 255 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0448 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0940 Cmu-Chr1:12894479 Cmu08g0448 Cmu-Chr8:14837565 4.30E-134 dispersed
Cmu08g0448 Cmu-Chr8:14837565 Cmu09g0141 Cmu-Chr9:1595205 2.00E-136 dispersed
Cmu08g0448 Cmu-Chr8:14837565 Cmu07g1401 Cmu-Chr7:29264052 2.60E-163 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu02g0127 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.5 6.6e-205 711.1
Cmu01g2223 . 17 709 Strubbelig Receptor Gene Family AT4G03390 51.7 3.0e-141 499.6
Cmu09g0141 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 3.4e-92 336.7
Cmu10g2475 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.5 3.8e-186 648.7
Cmu08g0448 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.8e-193 672.9
Cmu07g1401 . 166 855 Strubbelig Receptor Gene Family AT1G78980 50.9 6.3e-146 515.0
Cmu09g0141 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.2 5.7e-123 438.7
Cmu08g0448 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.6e-148 521.5
Cmu01g0940 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.2 1.4e-84 311.2
Cmu10g2475 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.5 3.8e-186 648.7
Cmu02g0127 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.5 6.6e-205 711.1
Cmu01g2223 . 17 709 Strubbelig Receptor Gene Family AT4G03390 51.7 3.0e-141 499.6
Cmu09g0141 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 3.4e-92 336.7
Cmu08g0448 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.6e-148 521.5
Cmu08g0448 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.8e-193 672.9
Cmu07g1401 . 166 855 Strubbelig Receptor Gene Family AT1G78980 50.9 6.3e-146 515.0
Cmu09g0141 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.2 5.7e-123 438.7
Cmu07g1401 . 161 855 Strubbelig Receptor Gene Family AT1G53730 60.3 4.1e-201 698.4
Cmu09g0141 . 1 712 Strubbelig Receptor Gene Family AT1G53730 60.7 5.8e-187 651.4
Cmu08g0448 . 20 693 Strubbelig Receptor Gene Family AT1G53730 50.4 1.3e-154 543.9
Cmu01g0940 . 7 689 Strubbelig Receptor Gene Family AT1G53730 50.9 4.5e-147 518.8
Cmu07g1401 . 161 850 Strubbelig Receptor Gene Family AT3G14350 56.8 1.5e-179 626.7
Cmu09g0141 . 6 702 Strubbelig Receptor Gene Family AT3G14350 55.6 2.6e-168 589.3
Cmu01g0940 . 201 711 Strubbelig Receptor Gene Family AT4G22130 68.2 4.2e-177 618.2
Cmu07g1401 . 534 862 Strubbelig Receptor Gene Family AT4G22130 63.4 4.8e-120 428.7
Cmu09g0141 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.9 2.9e-117 419.5
Cmu02g0127 . 485 796 Strubbelig Receptor Gene Family AT4G22130 58.8 6.0e-107 385.2
Cmu08g0448 . 360 707 Strubbelig Receptor Gene Family AT4G22130 52.4 1.2e-99 360.9
Cmu10g2475 . 387 709 Strubbelig Receptor Gene Family AT4G22130 51.7 9.4e-92 334.7
Cmu01g2223 . 442 709 Strubbelig Receptor Gene Family AT4G22130 60.0 1.4e-90 330.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010758 0 1 1 1 0 1 2 0 0 1 1 1 2 1 0 2 1 1 2 1 1 0 1 0 0 1 1 0 0 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75705 PF00069 Pkinase 2.30E-43 CL0016 Cmu PK