Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu08g0457 | ATGAGCTCCAATCATTTAGAGATGATGAGCAACCATTTTACAGTGGAGAACTCCGATCAAAGTGATCATCAAGGACCAATCAGCTCCATTAATCCTTTTTTCACTGAGAGCTTTTGTCTTGAAAAGTTTGCTTATTTTAATGAAATCCCTAGCTGTGTTCCACCTCCTCTTTACTCTTCATTTCCTACATTTAACAGAGAAGATCCCAAGAGGTTGGGAGGAAGAAAGAGGAAAAGAGAAAATGAAAGGGATGAGGAGAAGCCAAAAGAAGTGATTCATGTGCGGGCAAAAAGAGGTGAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTAAGAAGAGAGAAAATAAACCAGAGACTGAGGTTCTTACAGGACTTGGTTCCAGGATGCTACAAGACAATGGGAATGGCAGTTATGTTGGATGTGATCATAAATTACATCCAATCTCTGCAGAATCAGATTGAGTTTCTCTCCATGAAGCTTTCAGTTGCTAGTCGCTACTATGATTTCAACAACAGCTCGGAGACTAATGGCCCCGAGATAATGCAGGCAACAAATGGGTGTGATGATATTCAAGAGATGCAGAGGATTGTACTTAGAGAAGAAGGGTATGGAGGGCCCTCTTACCACCACTCTACTTTTCCACCTCTCTAA | 654 | 41.44 | MSSNHLEMMSNHFTVENSDQSDHQGPISSINPFFTESFCLEKFAYFNEIPSCVPPPLYSSFPTFNREDPKRLGGRKRKRENERDEEKPKEVIHVRAKRGEATDSHSLAERVRREKINQRLRFLQDLVPGCYKTMGMAVMLDVIINYIQSLQNQIEFLSMKLSVASRYYDFNNSSETNGPEIMQATNGCDDIQEMQRIVLREEGYGGPSYHHSTFPPL | 217 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 15218539 | 15224111 | + | CmPI595203_08g004570.1 | Cmu08g0457 | 421943 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu08g0457 | 217 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 98 | 168 | IPR036638 | GO:0046983(InterPro) | |
Cmu08g0457 | 217 | CDD | bHLH_AtBPE_like | 90 | 174 | - | - | |
Cmu08g0457 | 217 | Gene3D | - | 97 | 168 | IPR036638 | GO:0046983(InterPro) | |
Cmu08g0457 | 217 | MobiDBLite | consensus disorder prediction | 68 | 90 | - | - | |
Cmu08g0457 | 217 | SMART | finulus | 106 | 156 | IPR011598 | GO:0046983(InterPro) | |
Cmu08g0457 | 217 | Pfam | Helix-loop-helix DNA-binding domain | 104 | 151 | IPR011598 | GO:0046983(InterPro) | |
Cmu08g0457 | 217 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 100 | 150 | IPR011598 | GO:0046983(InterPro) | |
Cmu08g0457 | 217 | MobiDBLite | consensus disorder prediction | 64 | 90 | - | - | |
Cmu08g0457 | 217 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 75 | 175 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu04g1152 | Cmu-Chr4:26074358 | Cmu08g0457 | Cmu-Chr8:15218539 | 1.40E-37 | dispersed | |
Cmu05g1249 | Cmu-Chr5:13423372 | Cmu08g0457 | Cmu-Chr8:15218539 | 1.40E-31 | dispersed | |
Cmu07g1641 | Cmu-Chr7:31708953 | Cmu08g0457 | Cmu-Chr8:15218539 | 4.00E-08 | dispersed | |
Cmu08g0457 | Cmu-Chr8:15218539 | Cmu09g0819 | Cmu-Chr9:7926626 | 1.10E-27 | dispersed | |
Cmu08g0457 | Cmu-Chr8:15218539 | Cmu06g1531 | Cmu-Chr6:26575751 | 3.90E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6630 | PF00010 | HLH | 6.40E-06 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu08g0457 | - | - | - | 0.0 |