Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0457 ATGAGCTCCAATCATTTAGAGATGATGAGCAACCATTTTACAGTGGAGAACTCCGATCAAAGTGATCATCAAGGACCAATCAGCTCCATTAATCCTTTTTTCACTGAGAGCTTTTGTCTTGAAAAGTTTGCTTATTTTAATGAAATCCCTAGCTGTGTTCCACCTCCTCTTTACTCTTCATTTCCTACATTTAACAGAGAAGATCCCAAGAGGTTGGGAGGAAGAAAGAGGAAAAGAGAAAATGAAAGGGATGAGGAGAAGCCAAAAGAAGTGATTCATGTGCGGGCAAAAAGAGGTGAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTAAGAAGAGAGAAAATAAACCAGAGACTGAGGTTCTTACAGGACTTGGTTCCAGGATGCTACAAGACAATGGGAATGGCAGTTATGTTGGATGTGATCATAAATTACATCCAATCTCTGCAGAATCAGATTGAGTTTCTCTCCATGAAGCTTTCAGTTGCTAGTCGCTACTATGATTTCAACAACAGCTCGGAGACTAATGGCCCCGAGATAATGCAGGCAACAAATGGGTGTGATGATATTCAAGAGATGCAGAGGATTGTACTTAGAGAAGAAGGGTATGGAGGGCCCTCTTACCACCACTCTACTTTTCCACCTCTCTAA 654 41.44 MSSNHLEMMSNHFTVENSDQSDHQGPISSINPFFTESFCLEKFAYFNEIPSCVPPPLYSSFPTFNREDPKRLGGRKRKRENERDEEKPKEVIHVRAKRGEATDSHSLAERVRREKINQRLRFLQDLVPGCYKTMGMAVMLDVIINYIQSLQNQIEFLSMKLSVASRYYDFNNSSETNGPEIMQATNGCDDIQEMQRIVLREEGYGGPSYHHSTFPPL 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15218539 15224111 + CmPI595203_08g004570.1 Cmu08g0457 421943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0457 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 98 168 IPR036638 GO:0046983(InterPro)
Cmu08g0457 217 CDD bHLH_AtBPE_like 90 174 - -
Cmu08g0457 217 Gene3D - 97 168 IPR036638 GO:0046983(InterPro)
Cmu08g0457 217 MobiDBLite consensus disorder prediction 68 90 - -
Cmu08g0457 217 SMART finulus 106 156 IPR011598 GO:0046983(InterPro)
Cmu08g0457 217 Pfam Helix-loop-helix DNA-binding domain 104 151 IPR011598 GO:0046983(InterPro)
Cmu08g0457 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 150 IPR011598 GO:0046983(InterPro)
Cmu08g0457 217 MobiDBLite consensus disorder prediction 64 90 - -
Cmu08g0457 217 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 75 175 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1152 Cmu-Chr4:26074358 Cmu08g0457 Cmu-Chr8:15218539 1.40E-37 dispersed
Cmu05g1249 Cmu-Chr5:13423372 Cmu08g0457 Cmu-Chr8:15218539 1.40E-31 dispersed
Cmu07g1641 Cmu-Chr7:31708953 Cmu08g0457 Cmu-Chr8:15218539 4.00E-08 dispersed
Cmu08g0457 Cmu-Chr8:15218539 Cmu09g0819 Cmu-Chr9:7926626 1.10E-27 dispersed
Cmu08g0457 Cmu-Chr8:15218539 Cmu06g1531 Cmu-Chr6:26575751 3.90E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6630 PF00010 HLH 6.40E-06 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0457 - - - 0.0