Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0469 ATGGTTTACTCCGACAAAATGCAAGAAATTGCATCCAAAATGGGTTTCACACTCTCCGATTTCGCCGATACTTTGGAACAAGAACGCCGTAAAGTCCTCATGTTTCAGCGCGAGCTCCCTCTCTGTTTGCAGCTCGTTTCCCATGCCATTGATTGTTGCAGGCAGCAGTTATCGGAGACGACGACGGAAAATCGTCAATCGGAATGCTCCGAGCAGACTTCCAGTGACATGGGTCCGGTTCTTGAGGAGTTCATTCCGATTAACAGAAATGGGGTTTCTGATTTTGAACAAACGGAGAAAAATAAGAATAACGACGACTCTGATTTAAACAATTTGAATTTGGCTCCGTCTGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACTTCAGATCCTCCTCCCCTGAATCAGGACCAGGCAGAGAACACGCCGGTTGTTGACGTCAACAGAAATGGCGGCGCTTTCCGGCCGTTTCAGAAGGAGAAAACCGGTAGCGCCGGCGGGGGAGGTGGGGCATCCTCGTCTTCAGCTCCGGCTCCGGCTGCGGAAACGAGCTCGACGACGGAGACGGGGTCAGGCGGAAGTAGCCGACGGGAAGAGAAGGAAGCTCAGAATCAGAGGAAACAGAGACGGTGCTGGTCGCCGGAGCTGCACCGGCGGTTCCTTCATGCACTTCAGCAGCTCGGAGGTTCCCATGTGGCGACGCCGAAGCAAATAAGGGAATTGATGAAGGTGGATGGTCTTACCAACGACGAAGTGAAAAGTCATCTACAGAAGTATCGTCTGCACACGAGACGGCCAAGTCCGACGATCCACAACAACGAGAGCGGCCACGCGCCTCAGTTCCTGGTGGTTGGCGGCATATGGGTACCGGCGGCCGAGTACGCCGCCATGTCCACCACCACTTCCTCGGGAGAAGCAGTCAGCGCCGCTACCACGAACGGAATTTATGCACCGGTGGCAGCAGCGGCAGCGCCGCATCCATTACCCAGCACAGTCCAAAAGCCCAAACCCAAGATCCCTTCCTCCGCAGCCGTCGCCGCCGCCGAATCTAATTCTCCGACTACATCTTCCTCTACTCATACGTCTTCAGTTTCACCAGCTGCCTCTTGA 1113 54.36 MVYSDKMQEIASKMGFTLSDFADTLEQERRKVLMFQRELPLCLQLVSHAIDCCRQQLSETTTENRQSECSEQTSSDMGPVLEEFIPINRNGVSDFEQTEKNKNNDDSDLNNLNLAPSDWLRSAQLWNQTSDPPPLNQDQAENTPVVDVNRNGGAFRPFQKEKTGSAGGGGGASSSSAPAPAAETSSTTETGSGGSSRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPTIHNNESGHAPQFLVVGGIWVPAAEYAAMSTTTSSGEAVSAATTNGIYAPVAAAAAPHPLPSTVQKPKPKIPSSAAVAAAESNSPTTSSSTHTSSVSPAAS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15637171 15640149 + CmPI595203_08g004690.1 Cmu08g0469 421955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0469 370 MobiDBLite consensus disorder prediction 126 146 - -
Cmu08g0469 370 MobiDBLite consensus disorder prediction 346 370 - -
Cmu08g0469 370 MobiDBLite consensus disorder prediction 126 212 - -
Cmu08g0469 370 MobiDBLite consensus disorder prediction 327 370 - -
Cmu08g0469 370 MobiDBLite consensus disorder prediction 168 193 - -
Cmu08g0469 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
Cmu08g0469 370 NCBIfam myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677(InterPro)
Cmu08g0469 370 MobiDBLite consensus disorder prediction 194 212 - -
Cmu08g0469 370 FunFam Myb family transcription factor 207 265 - -
Cmu08g0469 370 Pfam Myb-like DNA-binding domain 210 261 IPR001005 -
Cmu08g0469 370 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 12 342 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0469 370 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
Cmu08g0469 370 Gene3D - 207 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0469 Cmu-Chr8:15637171 Cmu11g0258 Cmu-Chr11:3136476 5.80E-42 dispersed
Cmu05g1581 Cmu-Chr5:25302101 Cmu08g0469 Cmu-Chr8:15637171 2.10E-08 transposed
Cmu05g2357 Cmu-Chr5:32775414 Cmu08g0469 Cmu-Chr8:15637171 8.90E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6631 PF00249 Myb_DNA-binding 1.60E-06 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0469 - - - 0.0