Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0473 ATGTTCAACAATGGTCTGTCTTTAAACGCCATTGTTTCGCTTTGTAAAGTCGAAGAAGAGGAAGAAGAAAAAGGAAAAGACGAAAAAAGGTTCGAAAATGGTGGATTAGACGTTGGAGATAGAAACGAAGGTTACGTACAGAGAGTGGAGAGAGAAAGTGATATCTGTTTTACCTCTGGAAGAAGCTTTGAAAACCCAGAACAGTTCTATGCCCATTCTTCTTCTTCTTCTTCAATTTTTCTTCGGGGAGACGACAGTGGGCGATTCCATACGCGTTTTCTTCCGGATATTGAGGAACTTCAACAATCAGCTGCTGCTATTGCTGCTTTTCATCAAGATGATGCTGTTGATTTAAGCCCAAGCTCTGTTTTCAGTTTAAAATCGACCCACAATACAGCTTTTCCAATCTACCTACCATACGGGAATACGGATGTGGGTTCAATAGGAAGAACAGGGTATTTGGACACAGGACAGGAATTGATGCGGTTGAAGAGGCTGGCTCCGCCGCAGTCGGTGGCGGTGACGGTGGCAGCTTCGTCATCGTTGGGAAACGGGAGCTTTGAGAACTGGGGAGAGTCAGCCATGGCAGATAATAGCCAGCAGACTGACACTTCTACAGACATCGACACTGATGAACGAAACCAGTTTCAAGGAGCTGCACATGGAGCTCTCATGGCGGTGGACTCCATGGATCAATCAAAACCAAAATCTGCAGATCAGAAGACTCTTCGTAGACTTGCTCAGAATCGAGAAGCAGCCAGGAAGAGTCGACTGAGGAAGAAAGCATATGTCCAGCAGCTGGAAAATAGTCGACAGAGGCTTGCACAGCTAGAGCAGGAGCTTCATCGAGCACGCCAACAGGGCATTTTTGTGGCTTCCGGGGCAGGAGATCATTGTGCATCAATGGCAGGAAATGGTGCATTGGCATTTGATCTCGACTATGCACGTTGGCTTGACGAGCATCAACGGCTGATCAATGATTTGAGAGCATCTGCAAATTCTCAGTTGGGGGACGACGAATTGAGATTTCTTGTTGATGGGGTGATGGCACATTATGACGAACTCTTCAAGCTGAAAAGTGTAGGTGCTAAGGCCGATGTATTCCACATTCTTTCGGGCATGTGGAAGACTCCTGCTGAGAGGTGTTTCATGTGGCTGGGAGGATTCCGTTCATCCGAGCTTCTAAAGATAGTAGGGAGCCATTTGGAGCCTCTAACAGATCAGCAGTTGATGGGTATCTGCAATTTGCAGCAATCTTCCCAACAAGCTGAAGATGCATTGTCGCAAGGAATTGAAGCTTTGCAACAATCTCTTGTAGAAACTCTTTCCACTGCTTCTTTAGGTCCAGCCAGTTCAGGAAATGTTGCTGATTACATGGGCCAAATGGCAATCGCGATGAGCAAGCTAACAACGCTCGAGAACTTTCTACATCAGGCGGATCTTCTGAGGCAGCAAACACTCCAACAGATGCATCGGATATTAACTACTCGTCAAGCTGCACGAGCGCTTCTTGTGATCAGCGATTACATTTCACGTCTTCGAGCTCTCAGTTCTCTGTGGTTAGCACGGCCGAGAGACTGA 1581 46.81 MFNNGLSLNAIVSLCKVEEEEEEKGKDEKRFENGGLDVGDRNEGYVQRVERESDICFTSGRSFENPEQFYAHSSSSSSIFLRGDDSGRFHTRFLPDIEELQQSAAAIAAFHQDDAVDLSPSSVFSLKSTHNTAFPIYLPYGNTDVGSIGRTGYLDTGQELMRLKRLAPPQSVAVTVAASSSLGNGSFENWGESAMADNSQQTDTSTDIDTDERNQFQGAAHGALMAVDSMDQSKPKSADQKTLRRLAQNREAARKSRLRKKAYVQQLENSRQRLAQLEQELHRARQQGIFVASGAGDHCASMAGNGALAFDLDYARWLDEHQRLINDLRASANSQLGDDELRFLVDGVMAHYDELFKLKSVGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGSHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSTASLGPASSGNVADYMGQMAIAMSKLTTLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWLARPRD 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15768780 15772047 + CmPI595203_08g004730.1 Cmu08g0473 421959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0473 526 CDD bZIP_HBP1b-like 241 293 - -
Cmu08g0473 526 ProSiteProfiles DOG1 domain profile. 307 523 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cmu08g0473 526 Pfam Seed dormancy control 325 398 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cmu08g0473 526 Coils Coil 260 287 - -
Cmu08g0473 526 FunFam BZIP family transcription factor 240 289 - -
Cmu08g0473 526 SMART brlzneu 237 308 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0473 526 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 244 259 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0473 526 Gene3D - 240 289 - -
Cmu08g0473 526 PANTHER TRANSCRIPTION FACTOR TGA9 197 526 - -
Cmu08g0473 526 Pfam bZIP transcription factor 240 280 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0473 526 SUPERFAMILY Leucine zipper domain 241 284 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0473 526 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 239 283 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0473 Cmu-Chr8:15768780 Cmu08g1013 Cmu-Chr8:22364478 3.20E-118 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6632 PF14144 DOG1 2.20E-29 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0473 K14431 - csv:101210308 832.017