Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu08g0473 | ATGTTCAACAATGGTCTGTCTTTAAACGCCATTGTTTCGCTTTGTAAAGTCGAAGAAGAGGAAGAAGAAAAAGGAAAAGACGAAAAAAGGTTCGAAAATGGTGGATTAGACGTTGGAGATAGAAACGAAGGTTACGTACAGAGAGTGGAGAGAGAAAGTGATATCTGTTTTACCTCTGGAAGAAGCTTTGAAAACCCAGAACAGTTCTATGCCCATTCTTCTTCTTCTTCTTCAATTTTTCTTCGGGGAGACGACAGTGGGCGATTCCATACGCGTTTTCTTCCGGATATTGAGGAACTTCAACAATCAGCTGCTGCTATTGCTGCTTTTCATCAAGATGATGCTGTTGATTTAAGCCCAAGCTCTGTTTTCAGTTTAAAATCGACCCACAATACAGCTTTTCCAATCTACCTACCATACGGGAATACGGATGTGGGTTCAATAGGAAGAACAGGGTATTTGGACACAGGACAGGAATTGATGCGGTTGAAGAGGCTGGCTCCGCCGCAGTCGGTGGCGGTGACGGTGGCAGCTTCGTCATCGTTGGGAAACGGGAGCTTTGAGAACTGGGGAGAGTCAGCCATGGCAGATAATAGCCAGCAGACTGACACTTCTACAGACATCGACACTGATGAACGAAACCAGTTTCAAGGAGCTGCACATGGAGCTCTCATGGCGGTGGACTCCATGGATCAATCAAAACCAAAATCTGCAGATCAGAAGACTCTTCGTAGACTTGCTCAGAATCGAGAAGCAGCCAGGAAGAGTCGACTGAGGAAGAAAGCATATGTCCAGCAGCTGGAAAATAGTCGACAGAGGCTTGCACAGCTAGAGCAGGAGCTTCATCGAGCACGCCAACAGGGCATTTTTGTGGCTTCCGGGGCAGGAGATCATTGTGCATCAATGGCAGGAAATGGTGCATTGGCATTTGATCTCGACTATGCACGTTGGCTTGACGAGCATCAACGGCTGATCAATGATTTGAGAGCATCTGCAAATTCTCAGTTGGGGGACGACGAATTGAGATTTCTTGTTGATGGGGTGATGGCACATTATGACGAACTCTTCAAGCTGAAAAGTGTAGGTGCTAAGGCCGATGTATTCCACATTCTTTCGGGCATGTGGAAGACTCCTGCTGAGAGGTGTTTCATGTGGCTGGGAGGATTCCGTTCATCCGAGCTTCTAAAGATAGTAGGGAGCCATTTGGAGCCTCTAACAGATCAGCAGTTGATGGGTATCTGCAATTTGCAGCAATCTTCCCAACAAGCTGAAGATGCATTGTCGCAAGGAATTGAAGCTTTGCAACAATCTCTTGTAGAAACTCTTTCCACTGCTTCTTTAGGTCCAGCCAGTTCAGGAAATGTTGCTGATTACATGGGCCAAATGGCAATCGCGATGAGCAAGCTAACAACGCTCGAGAACTTTCTACATCAGGCGGATCTTCTGAGGCAGCAAACACTCCAACAGATGCATCGGATATTAACTACTCGTCAAGCTGCACGAGCGCTTCTTGTGATCAGCGATTACATTTCACGTCTTCGAGCTCTCAGTTCTCTGTGGTTAGCACGGCCGAGAGACTGA | 1581 | 46.81 | MFNNGLSLNAIVSLCKVEEEEEEKGKDEKRFENGGLDVGDRNEGYVQRVERESDICFTSGRSFENPEQFYAHSSSSSSIFLRGDDSGRFHTRFLPDIEELQQSAAAIAAFHQDDAVDLSPSSVFSLKSTHNTAFPIYLPYGNTDVGSIGRTGYLDTGQELMRLKRLAPPQSVAVTVAASSSLGNGSFENWGESAMADNSQQTDTSTDIDTDERNQFQGAAHGALMAVDSMDQSKPKSADQKTLRRLAQNREAARKSRLRKKAYVQQLENSRQRLAQLEQELHRARQQGIFVASGAGDHCASMAGNGALAFDLDYARWLDEHQRLINDLRASANSQLGDDELRFLVDGVMAHYDELFKLKSVGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGSHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSTASLGPASSGNVADYMGQMAIAMSKLTTLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWLARPRD | 526 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 15768780 | 15772047 | + | CmPI595203_08g004730.1 | Cmu08g0473 | 421959 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu08g0473 | 526 | CDD | bZIP_HBP1b-like | 241 | 293 | - | - | |
Cmu08g0473 | 526 | ProSiteProfiles | DOG1 domain profile. | 307 | 523 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Cmu08g0473 | 526 | Pfam | Seed dormancy control | 325 | 398 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Cmu08g0473 | 526 | Coils | Coil | 260 | 287 | - | - | |
Cmu08g0473 | 526 | FunFam | BZIP family transcription factor | 240 | 289 | - | - | |
Cmu08g0473 | 526 | SMART | brlzneu | 237 | 308 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu08g0473 | 526 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 244 | 259 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu08g0473 | 526 | Gene3D | - | 240 | 289 | - | - | |
Cmu08g0473 | 526 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 197 | 526 | - | - | |
Cmu08g0473 | 526 | Pfam | bZIP transcription factor | 240 | 280 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu08g0473 | 526 | SUPERFAMILY | Leucine zipper domain | 241 | 284 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu08g0473 | 526 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 239 | 283 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu08g0473 | Cmu-Chr8:15768780 | Cmu08g1013 | Cmu-Chr8:22364478 | 3.20E-118 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6632 | PF14144 | DOG1 | 2.20E-29 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu08g0473 | K14431 | - | csv:101210308 | 832.017 |