Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu08g0506 | ATGGTGAAGAAGGAATTAGCAAATGATGACATTCATTCCACAACACTCTCAACAAGTAAAAAGAAATACAAGGGAGTAAGAATGAGAAGCTGGGGTTCATGGGTTTCTGAAATTAGAGCTCCAAATCAAAAGACAAGAATATGGTTAGGTTCATATTCGACGGCGGAGGCCGCCGCCAGAGCTTACGACGCCGCCCTCTTGTGCCTTAAAGGCTCCTCTGCCAATCTAAATTTTCCAATCTCTTCTTCTTCCTTTGCTCATTTTCACAATTTTCTCTCTTCAAATCATGATGATAATAATGTTATGTCTCCAAAGTCCATCCAAAGAGTTGCGGCCGAAGCTGCAGCTAACACCGCCTTTTTTGATGGCAATGTCGACAATAATACGACGGGATCTAACGATGTTCTGCCATCGTCGCCACTGCCTTCCTCCTCCTCCTCTTCTTCTTCTTCCTCTGTCTCGTCAACGTCGAATAATGATTCGTTTATGATGATGGAGCCGTCGTGGTTCAACTTTGATGACATACTCTCCCCTAAGTACGTTGGGCAAATGATGGATGGAACTCTTTTTGATCCACCCATTATTGATGATTTTTATGAAGAAAGTGATATTCGTTTATGGAGCTTCTGTTGA | 633 | 42.65 | MVKKELANDDIHSTTLSTSKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPISSSSFAHFHNFLSSNHDDNNVMSPKSIQRVAAEAAANTAFFDGNVDNNTTGSNDVLPSSPLPSSSSSSSSSSVSSTSNNDSFMMMEPSWFNFDDILSPKYVGQMMDGTLFDPPIIDDFYEESDIRLWSFC | 210 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 16811863 | 16812495 | - | CmPI595203_08g005060.1 | Cmu08g0506 | 421992 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu08g0506 | 210 | MobiDBLite | consensus disorder prediction | 131 | 158 | - | - | |
Cmu08g0506 | 210 | PRINTS | Ethylene responsive element binding protein signature | 45 | 61 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu08g0506 | 210 | PRINTS | Ethylene responsive element binding protein signature | 23 | 34 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu08g0506 | 210 | CDD | AP2 | 21 | 81 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu08g0506 | 210 | Pfam | AP2 domain | 22 | 71 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu08g0506 | 210 | SUPERFAMILY | DNA-binding domain | 22 | 81 | IPR016177 | GO:0003677(InterPro) | |
Cmu08g0506 | 210 | ProSiteProfiles | AP2/ERF domain profile. | 22 | 79 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu08g0506 | 210 | SMART | rav1_2 | 22 | 85 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu08g0506 | 210 | FunFam | ethylene-responsive transcription factor ERF014-like | 21 | 81 | - | - | |
Cmu08g0506 | 210 | Gene3D | AP2/ERF domain | 21 | 81 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu08g0506 | 210 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 18 | 160 | IPR051032 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu03g2089 | Cmu-Chr3:29328537 | Cmu08g0506 | Cmu-Chr8:16811863 | 3.10E-21 | dispersed | |
Cmu08g0506 | Cmu-Chr8:16811863 | Cmu08g0919 | Cmu-Chr8:21466814 | 2.20E-17 | dispersed | |
Cmu11g1563 | Cmu-Chr11:27894269 | Cmu08g0506 | Cmu-Chr8:16811863 | 1.10E-41 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6636 | PF00847 | AP2 | 4.00E-12 | CL0081 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu08g0506 | - | - | - | 0.0 |