Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0506 ATGGTGAAGAAGGAATTAGCAAATGATGACATTCATTCCACAACACTCTCAACAAGTAAAAAGAAATACAAGGGAGTAAGAATGAGAAGCTGGGGTTCATGGGTTTCTGAAATTAGAGCTCCAAATCAAAAGACAAGAATATGGTTAGGTTCATATTCGACGGCGGAGGCCGCCGCCAGAGCTTACGACGCCGCCCTCTTGTGCCTTAAAGGCTCCTCTGCCAATCTAAATTTTCCAATCTCTTCTTCTTCCTTTGCTCATTTTCACAATTTTCTCTCTTCAAATCATGATGATAATAATGTTATGTCTCCAAAGTCCATCCAAAGAGTTGCGGCCGAAGCTGCAGCTAACACCGCCTTTTTTGATGGCAATGTCGACAATAATACGACGGGATCTAACGATGTTCTGCCATCGTCGCCACTGCCTTCCTCCTCCTCCTCTTCTTCTTCTTCCTCTGTCTCGTCAACGTCGAATAATGATTCGTTTATGATGATGGAGCCGTCGTGGTTCAACTTTGATGACATACTCTCCCCTAAGTACGTTGGGCAAATGATGGATGGAACTCTTTTTGATCCACCCATTATTGATGATTTTTATGAAGAAAGTGATATTCGTTTATGGAGCTTCTGTTGA 633 42.65 MVKKELANDDIHSTTLSTSKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPISSSSFAHFHNFLSSNHDDNNVMSPKSIQRVAAEAAANTAFFDGNVDNNTTGSNDVLPSSPLPSSSSSSSSSSVSSTSNNDSFMMMEPSWFNFDDILSPKYVGQMMDGTLFDPPIIDDFYEESDIRLWSFC 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16811863 16812495 - CmPI595203_08g005060.1 Cmu08g0506 421992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0506 210 MobiDBLite consensus disorder prediction 131 158 - -
Cmu08g0506 210 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0506 210 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0506 210 CDD AP2 21 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0506 210 Pfam AP2 domain 22 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0506 210 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677(InterPro)
Cmu08g0506 210 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0506 210 SMART rav1_2 22 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0506 210 FunFam ethylene-responsive transcription factor ERF014-like 21 81 - -
Cmu08g0506 210 Gene3D AP2/ERF domain 21 81 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0506 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 160 IPR051032 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g2089 Cmu-Chr3:29328537 Cmu08g0506 Cmu-Chr8:16811863 3.10E-21 dispersed
Cmu08g0506 Cmu-Chr8:16811863 Cmu08g0919 Cmu-Chr8:21466814 2.20E-17 dispersed
Cmu11g1563 Cmu-Chr11:27894269 Cmu08g0506 Cmu-Chr8:16811863 1.10E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6636 PF00847 AP2 4.00E-12 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0506 - - - 0.0