Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0509 ATGGGTGAGAATTCTATTGTGAGTAAGTTGAAGCCTTATATTCTAGTGGTGAGCCTACAATTTGGAATTGCAGGCATATATGTAATATGCATGGCCACTCTCACAAAAGGCATGAGTCGTTATGTTTTGATCGTGTATCGAAACACTATTGCTGCTCTCTTTCTCGCTCCGTTCGCACTAATCTTTGAAAGGAAAACAAGACCAAAGATGACACTCCCTGTCGCTTTACAAATCATGGTCTTAGGTTTTCTAGAACCAGTTGTGGATCAAGGGTTTGGTTATCTAGGAATGATGTACACGTCAGCATCATTTGCATCGGCCATCATGAATGCTGTGCCTTCTGTTACCTTTATCATTGCAGTCATTTTTCGGGTGGAGCATTTAAATATAAAACAAGTACGAGGGGTAGCCAAAGTAATTGGCACTTTAGTGACCTTTGCTGGAGCTTTGGTTATGACACTTTACAAAGGCCCAATTCTTGAATTCTTTTGGACACAAAAAACCAACCACCATGTTAACAGCGGCGCCGCCGCAGCCAATCAGCACTGGGTGGCCGGAACTTTGTTCATCCTTCTGGGCTGCGTGTCTTGGTCTTGTTTCTACATATTACAATCTATAACAGTGAAGAGATACCCAGCGGAGCTGTCTCTGTCGGCATTGATATGCTTGGCCGGTGCACTTCAAAGCACAGTGATAGCAGTAGCTATAGAGCATCGTCCTAGCGCATGGGCTGTGGGTTGGGACTCTAGGCTTCTAGCTCCTCTCTATACGGGAATAGTTGGATCAGGAATTGCATATTACTTTCAAGCTATAGTTATGAAGACAAGAGGTCCTGTATTTGTGACGGCTTTCAACCCTTTATGTATGATTGTCGTCACTATTATCTCCTCTATTGTTCTCGCCGAGAAGATTCATCTTGGAAGCGTGATTGGAGCCATTATCATCGCACTTGGGCTTTATTCAGTCGTTTGGGGGAAAAGCAAGGATTATTCCACTGCCGGCAACCCCCAAAAGCCTAACGCCGCCGTGTCGGAGCTTCCAATTACTGCCTCTCAACCCCCAACCGAACAAGATGTTCATCTTCAACCTCCAAAATGA 1098 44.63 MGENSIVSKLKPYILVVSLQFGIAGIYVICMATLTKGMSRYVLIVYRNTIAALFLAPFALIFERKTRPKMTLPVALQIMVLGFLEPVVDQGFGYLGMMYTSASFASAIMNAVPSVTFIIAVIFRVEHLNIKQVRGVAKVIGTLVTFAGALVMTLYKGPILEFFWTQKTNHHVNSGAAAANQHWVAGTLFILLGCVSWSCFYILQSITVKRYPAELSLSALICLAGALQSTVIAVAIEHRPSAWAVGWDSRLLAPLYTGIVGSGIAYYFQAIVMKTRGPVFVTAFNPLCMIVVTIISSIVLAEKIHLGSVIGAIIIALGLYSVVWGKSKDYSTAGNPQKPNAAVSELPITASQPPTEQDVHLQPPK 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16935199 16941880 + CmPI595203_08g005090.1 Cmu08g0509 421995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0509 365 SUPERFAMILY Multidrug resistance efflux transporter EmrE 243 327 - -
Cmu08g0509 365 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 155 - -
Cmu08g0509 365 Pfam EamA-like transporter family 186 323 IPR000620 GO:0016020(InterPro)
Cmu08g0509 365 Pfam EamA-like transporter family 22 141 IPR000620 GO:0016020(InterPro)
Cmu08g0509 365 PANTHER WAT1-RELATED PROTEIN 14 335 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0509 Cmu-Chr8:16935199 Cmu10g2382 Cmu-Chr10:30243126 5.50E-93 dispersed
Cmu11g1565 Cmu-Chr11:27922639 Cmu08g0509 Cmu-Chr8:16935199 3.10E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0509 - - - 0.0