Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0515 ATGGCAGATCAAGTGCTGTGTAGTTCTTGCAGAGCTCTGAATTTGTTTTTGTTTGTTGTTTTAACATCTATTTTGGCCAATGTAGCTCTTGTTTGCGCTAAATCAACTATAGAGCCATGTTCGAACTCCGATTCTTGCAATGCCCTGCTTGGTTACACTCTTTACACCGACCTCAAGGTTTCTGAAGTTGCTTCGCTCTTTCAAGTCGACCCCATTTCGATTCTCACCGCTAACGCCATAGATGTTTCATACCCAGATGTTGAAAATCACATTCTCCCTTCGCAGCTCTTCGTCAAAATCCCCATTTCTTGTTCTTGCGTTGACGGGATTCGTAAGTCGGTTTCGACTCGGTACAAGACTCGCCCATCTGACACTCTCTCGTCGATTGCCGATTCCATCTACGCTGGTTTGGTCTCGTCAGATCAGATTCGGGAGGCAAATTCCATTTCGGACCCTTCTCTTCTCGATGTTGGACAGACCCTTGTTGTGCCGCTTCCTTGTACTTGCTTTAATGGAACTGACAATTCGTTGCCTGCTATTTACTTGTCTTACGTTGTTCAACCTGATGATACTTTAACTGGGATTGCTTTTAGATATTCGACCACTATCACTGACTTGATGGATGTTAATGCCATGGGCAACCCAGCGATTAAGGCTGGTGATATTTTGGCCGTCCCATTGCCTGCCTGTGCATCTAAGTTTTCTACATATGCCTCTGACTTTGGCTTGATCGTGCCCAATGGGAGCTATGCCATTACGGCGAGTCATTGTGTGCAATGTAGCTGTGGACCAGGGAACCTCAATATGTATTGCATGCCTGCTCCCTTCGCCGTTTCTTGTTCGAGTATGCAATGCAGAAACAGCAATCTAATGCTTGGGAATGTCACTGCACAGCACAGTAGTGCAGGTTGCAATGTTACTTCTTGTAGTTATGGTGGTTTTGTAAATGGCACCATTGTCACGACGTTGTCTTCGAATCTTCAGCCTCGATGCCCAGGGCCACAGCAATTTCCCCCACTGAAAGCCCCACCTACGACAGTAATCAGAGATACAAATTTTGCACCTGCACCTGCTCCTCAATTTGATGGCTCTGGATCACCTGCACCCGGATCGGGATTGATCCCTTCAACAACTGGTTCTCTTCCCGGACTCCCACCGGCCAGTGGCCCCATTGGTAGTACTTCTGGGATGAACTCTGCACCTTCCACTGCTTCCTCATTGATGCTAGATAACAGAGAGCAAAGCACCGGTAGGACTGATGTTATTCAAATGATGCATGTGATCTTCGAGTTCTGA 1296 46.84 MADQVLCSSCRALNLFLFVVLTSILANVALVCAKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQVDPISILTANAIDVSYPDVENHILPSQLFVKIPISCSCVDGIRKSVSTRYKTRPSDTLSSIADSIYAGLVSSDQIREANSISDPSLLDVGQTLVVPLPCTCFNGTDNSLPAIYLSYVVQPDDTLTGIAFRYSTTITDLMDVNAMGNPAIKAGDILAVPLPACASKFSTYASDFGLIVPNGSYAITASHCVQCSCGPGNLNMYCMPAPFAVSCSSMQCRNSNLMLGNVTAQHSSAGCNVTSCSYGGFVNGTIVTTLSSNLQPRCPGPQQFPPLKAPPTTVIRDTNFAPAPAPQFDGSGSPAPGSGLIPSTTGSLPGLPPASGPIGSTSGMNSAPSTASSLMLDNREQSTGRTDVIQMMHVIFEF 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17005716 17008233 - CmPI595203_08g005150.1 Cmu08g0515 422001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0515 431 MobiDBLite consensus disorder prediction 391 406 - -
Cmu08g0515 431 SUPERFAMILY LysM domain 116 165 IPR036779 -
Cmu08g0515 431 ProSiteProfiles LysM domain profile. 182 225 IPR018392 -
Cmu08g0515 431 ProSiteProfiles LysM domain profile. 116 163 IPR018392 -
Cmu08g0515 431 SMART LysM_2 117 164 IPR018392 -
Cmu08g0515 431 SMART LysM_2 183 226 IPR018392 -
Cmu08g0515 431 SUPERFAMILY LysM domain 182 227 IPR036779 -
Cmu08g0515 431 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 16 333 - -
Cmu08g0515 431 MobiDBLite consensus disorder prediction 355 406 - -
Cmu08g0515 431 Gene3D LysM domain 112 171 IPR036779 -
Cmu08g0515 431 CDD LysM 183 225 IPR018392 -
Cmu08g0515 431 Gene3D LysM domain 172 236 IPR036779 -
Cmu08g0515 431 CDD LysM 116 163 IPR018392 -
Cmu08g0515 431 Pfam LysM domain 118 164 IPR018392 -
Cmu08g0515 431 Pfam LysM domain 184 226 IPR018392 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0515 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0356 Cmu-Chr2:3271730 Cmu08g0515 Cmu-Chr8:17005716 3.80E-38 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu08g0515 . 15 395 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 73.6 3.3e-158 555.1
Cmu08g0515 . 15 395 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 64.1 1.8e-135 479.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007180 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 37