Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0537 ATGTCGGAAGTAATTGCCGTAATGGATATTGACGACGATAATGGCAACAACGAAGCTGAAAAGACAGACAAGGGCAAAAATGTTGCCAGTCCTGCTGCCGCACCCGACGGCAAAGCGATACCCTGGGTCGAGAAGTTTCGGCCTAAGTCTCTTGCTGATGTTGCTGCTCACCGCGACATTGTTGACACCATCGACAAGCTGACCAGTGAGCATAGGCTGCCACATCTCCTGTTGTACGGCCCTCCTGGCACAGGCAAGACATCAACTATTCTAGCGGTTGCTCGCAAGCTTTATGGAACAAACTACCATAATATGATTCTGGAGCTGAACGCATCAGATGATAGAGGGATAGATGTTGTCAGACAGCAGATTCAGGATTTTGCAAGTACCCAGAGCTTCTCATTTGGGGCAAAGGCATCTGTAAAATTGGTTTTATTGGACGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTACGTAGAGTAATTGAGAAATACACAAAAAATACGAGGTTTGCTCTTATTTGCAATCACGTCAATAAGATTATTCCAGCATTACAATCAAGGTGTACCCGCTTTCGATTTGCTCCCCTCGATAACTTTCATGTCACTGAGCGGCTCAGATATGTTATTGAGGCTGAGAGGTTGGATGTCACTGAGAGTGGCTTAACTGCCCTTGTTCGACTTTGCAGTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGTCAACGCATATGGCTTCTCAGCATATTACTGAAGAAGCTGTATACCTTTGCACAGGAAATCCAATGCCTAAAGACATAGAGCAAATATCATTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGCGAATATCTGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTTCGTTTTTAAGATAAAGATGCCATCAGATATCAGAGTCCAGTTGATTAATGATCTAGCTGACATAGAGTACCGGATGAGTTTCGGATGCAATGACAAGTTACAACTCGGATCGCTCATCTCATCTTTTACACGAGCTAGATCTGCACTCGTCGCTGCTGCACAGTAG 1092 43.77 MSEVIAVMDIDDDNGNNEAEKTDKGKNVASPAAAPDGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSEHRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTESGLTALVRLCSGDMRKALNILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTLFVFKIKMPSDIRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVAAAQ 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17332643 17338296 + CmPI595203_08g005370.1 Cmu08g0537 422023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0537 363 CDD AAA 60 198 - -
Cmu08g0537 363 Pfam ATPase family associated with various cellular activities (AAA) 76 198 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu08g0537 363 MobiDBLite consensus disorder prediction 9 34 - -
Cmu08g0537 363 Gene3D - 36 198 IPR027417 -
Cmu08g0537 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 257 IPR027417 -
Cmu08g0537 363 Gene3D - 264 361 - -
Cmu08g0537 363 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 41 355 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Cmu08g0537 363 FunFam Replication factor C subunit 5 264 361 - -
Cmu08g0537 363 SMART AAA_5 72 202 IPR003593 GO:0016887(InterPro)
Cmu08g0537 363 SUPERFAMILY post-AAA+ oligomerization domain-like 264 354 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Cmu08g0537 363 FunFam Replication factor C subunit 5 201 263 - -
Cmu08g0537 363 FunFam Replication factor C subunit 5 34 199 - -
Cmu08g0537 363 CDD HLD_clamp_RFC 203 261 IPR047854 -
Cmu08g0537 363 Pfam Replication factor C C-terminal domain 264 349 IPR013748 -
Cmu08g0537 363 Gene3D - 202 263 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0515 Cmu-Chr4:18033896 Cmu08g0537 Cmu-Chr8:17332643 2.00E-23 dispersed
Cmu07g1087 Cmu-Chr7:25830262 Cmu08g0537 Cmu-Chr8:17332643 7.40E-09 dispersed
Cmu08g0537 Cmu-Chr8:17332643 Cmu10g1183 Cmu-Chr10:4503770 8.50E-54 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0537 K10756 - csv:101217230 688.723