Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0544 ATGGGAAGTCTGCAGAAGGAAGCACAAATGAGTACGGTGGCGACACCGTCCTTTGGTGGTGGCAACAACCGGATAGCGGCAGTTAACACGGTGGAGAGAACAACTCCGGCCAACGCCGTCAAGCCACAGACCACCACCCATCAGAAACCTGGATGGAGAAAGTTTCTATCACACGTTGGCCCTGGCTTCCTCGTCTCATTGGCTTATCTTGATCCTGGCAATTTGGAAACGGACTTGCAAGCTGGAGCTAATCACGGATTCGAGCTTCTATGGGTGGTGCTTATCGGATTAATATTTGCGCTCATAATCCAATCCCTTGCTGCAAATCTTGGCGTAAGCACCGGAAAACACCTTTCGGAAGTATGCAAAGCCGAATATCCCATATTTGTGAAGTATTGCCTTTGGTTGCTGGCTGAAGTTGCTGTAATAGCCGCCGATATTCCCGAAGTGATAGGAACAGCCTTTGCTTTGAATATTCTATTCCATATTCCTGTTTGGGCTGGAGTTCTTCTCACCGGCTTAAGTACCCTATTGCTCCTTGGACTCCAAAGATATGGGGCTCGGAAGCTGGAATTGCTGATAGCAATATTGGTGTTCATAATGGCGGCGTGTTTCTTCGGGGAAATGAGCTACGTGAAGCCGCCGGCGAGCGGAGTTTTAAAAGGAATGTTTGTTCCAAAGCTGAAGGGGGAAGGAGCCACCGGCGACGCCATTGCTCTTCTGGGGGCCCTCGTTATGCCGCATAACCTGTTTCTTCATTCTGCTCTGGTGCTATCAAGGAAAGTCCCCAATTCCGTCCGCGGTGTCAACGACGCGTGTAGGTACTTCCTAATAGAGAGCGGATTTGCATTGTTCATAGCATTTTTAATAAACGTGGCCGTGGTTTCAGTTTCCGGCACCGTTTGTACGGTGGGAAAAGTCTCCGAAACCACTGCTAATCAGTGCTCCGACATAACTCTCAACTCCGCCTCCTTCCTCCTCCAGAACGTTTTGGGAAAATCAAGCTCCATTATTTACGCCATTGCGTTGTTTGCCTCCGGACAAAGCTCCAGCATCACCGGCACTTATGCCGGTCAGTTCATCATGCAGGGATTTTTGGACCTGAAAATGAAAACATGGGCGAGAAACCTTATGACAAGGTCCATTGCAATAACCCCTAGTCTCATTGTATCCATCATCGGTGGACCTCAAGGAGCTGGCCGTCTCATCATTATTGCATCGATGATTCTCTCCTTCGAGCTTCCATTTGCTCTAATTCCACTCCTCAAATTCAGTAGCAGCACCACCAAGATGGGCCCCCACAAGAATTCCATATACATCATTGTAATCTCGTGGATATTGGGCCTGGGAATCATCGGTATCAACATCTATTATCTCAGTACGGGCTTCGTGGGCTGGCTAATCCACAACAATTTACACAAAGTTGCAAATGTTTTCATTGGGATCGTTGTGTTTCCGTTAATGGCCACGTATATTCTTGCCGTTATTTACTTAACGTTTCGAAAAGACAGGGTGGTGACTTACATTGAGCCCGAAAAGGATGATCCTATGGGCCAAGCTCATTTGGAAAGTGGGCTGAACAATGCTTTTGGGCCGCGTGACGTCACCCCTGTGCCTTTTAGAGAGGATTTGGCCCATATCCCACTACCAGAGTAG 1656 48.25 MGSLQKEAQMSTVATPSFGGGNNRIAAVNTVERTTPANAVKPQTTTHQKPGWRKFLSHVGPGFLVSLAYLDPGNLETDLQAGANHGFELLWVVLIGLIFALIIQSLAANLGVSTGKHLSEVCKAEYPIFVKYCLWLLAEVAVIAADIPEVIGTAFALNILFHIPVWAGVLLTGLSTLLLLGLQRYGARKLELLIAILVFIMAACFFGEMSYVKPPASGVLKGMFVPKLKGEGATGDAIALLGALVMPHNLFLHSALVLSRKVPNSVRGVNDACRYFLIESGFALFIAFLINVAVVSVSGTVCTVGKVSETTANQCSDITLNSASFLLQNVLGKSSSIIYAIALFASGQSSSITGTYAGQFIMQGFLDLKMKTWARNLMTRSIAITPSLIVSIIGGPQGAGRLIIIASMILSFELPFALIPLLKFSSSTTKMGPHKNSIYIIVISWILGLGIIGINIYYLSTGFVGWLIHNNLHKVANVFIGIVVFPLMATYILAVIYLTFRKDRVVTYIEPEKDDPMGQAHLESGLNNAFGPRDVTPVPFREDLAHIPLPE 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17402584 17410066 - CmPI595203_08g005440.1 Cmu08g0544 422030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0544 551 PRINTS Natural resistance-associated macrophage protein signature 237 260 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cmu08g0544 551 PRINTS Natural resistance-associated macrophage protein signature 347 366 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cmu08g0544 551 PRINTS Natural resistance-associated macrophage protein signature 407 426 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cmu08g0544 551 PRINTS Natural resistance-associated macrophage protein signature 134 160 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cmu08g0544 551 PRINTS Natural resistance-associated macrophage protein signature 375 392 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cmu08g0544 551 PRINTS Natural resistance-associated macrophage protein signature 187 208 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cmu08g0544 551 PRINTS Natural resistance-associated macrophage protein signature 162 181 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cmu08g0544 551 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 44 510 IPR001046 GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cmu08g0544 551 Pfam Natural resistance-associated macrophage protein-like 76 437 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cmu08g0544 551 Hamap Divalent metal cation transporter MntH [mntH]. 42 463 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cmu08g0544 551 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 53 429 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cmu08g0544 551 NCBIfam Nramp family divalent metal transporter 60 426 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0544 Cmu-Chr8:17402584 Cmu10g2060 Cmu-Chr10:26472613 6.60E-167 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0544 K21398 - csv:101219356 939.102