Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0545 ATGTCTGCCCATAATCGCCGCCCTTCGTTTTCGTCGTCGACATCCTCCTCGTTGGCCAAACGACAAGCGTCCTCGGCCTCGTCGTCAGACAATGTCGGAAAAGTTATGGCAGTTCCGCCACATTTGGCGAAGAAGCGAGCACCACTTGGTAACCTAACGAATTTTAAGAATGTGTCTCATAGCGCAGCCAAAAGCTCTGTTCCTCCTGCTATTATGGTGCCTTGTGCAACCAAAGCTGTCAAGGCTAGAAAGAGTTCCCCTGCTAGAACTCGCAGCACTAACTTGACGACGACTAATACAACCACATTGCTCGATGTCGAAACTACGAATGCAATTGCTCCTAGCAATGTTACAGCTTTCTCAAGAACTGATGCAACCGCTGTCTCTAGTTCTATGGATGTCTCTCCCTCTAAATCAGATGGAGTTTCAGTTTCCTTAGATGAAACTATGTCTACTTGCGATTCGTTTAAGAGTCCGGACGTCGAGTACTTGGACAATACTGATGTCCCAGCAGTTGATTCTGTTGAGAGGAAAACTAAAAGCAGTCTCTGCATTTCAGGTCCTGCACCAATTAGTAGTCAGGCACCAGTTAAAGGTAGTATATGCAATAGAGATGTAATTACAGAAATGGAAACAGATGGCGACATCGTTGATGTTGACACGGATTTCATGGATCCGCAGCAATGTGCTACAATTGCTTGTGACATTTACAAGCACTTACGAGCATCTGAGGCAAAGAAAAGGCCTTCAACAGATTTCATGGAGAAAATTCAGAAGGATATAAATTCAAATATGCGTGCCATACTGATCGATTGGCTTGTGGAGGTAGCAGAAGAGTATAGGCTTGTCCCAGATACTCTATATTTGACAGTAAACTACATTGATCGATACCTATCTGGAAATTCGATGGATCGACAACGATTACAATTGCTTGGTGTTGCTTGCATGATGATTGCCTCAAAATATGAAGAGATCTGTGCGCCTCAAGTGGAAGAATTTTGTTACATAACTGATAACACATATTTTAAAGACGAGGTATTGGAAATGGAATCTTCTGTCTTGAATTACTTGAAGTTCGAAATGACGGCCCCTACACCTAAATGTTTCTTAAGGCGATTTGTTCGTGCTGCTCAAGGCGCCACCGATGAGGTTTCATCAATGCAGTTGGAATGCTTGGCCAACTTCCTTGCTGAATTATCTCTTATAGAATACAGTATGCTCTGCTACGCACCATCGCTCGTAGCTGCCTCGGCGATCTTCTTGGCGAAGTTCATACTTCTTCCAACTAAGAGACCATGGAACTCCACCTTGCAACATTATACTCATTATCAGCCATCCGACCTTGTCGACTGCGTTAAGGATTTGCATCGCCTCTGCTGCAACACCCACAATTCTAGCTTACCAGCCATCAGAGAGAAATACAGCCAGCATAAGTACAAGCACGTGGCCAAGAAGTACTGCCCTCCGACGATACCGCCGGAGTTCTTCCAGAATCAAACACAGTAA 1506 44.49 MSAHNRRPSFSSSTSSSLAKRQASSASSSDNVGKVMAVPPHLAKKRAPLGNLTNFKNVSHSAAKSSVPPAIMVPCATKAVKARKSSPARTRSTNLTTTNTTTLLDVETTNAIAPSNVTAFSRTDATAVSSSMDVSPSKSDGVSVSLDETMSTCDSFKSPDVEYLDNTDVPAVDSVERKTKSSLCISGPAPISSQAPVKGSICNRDVITEMETDGDIVDVDTDFMDPQQCATIACDIYKHLRASEAKKRPSTDFMEKIQKDINSNMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNSMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKDEVLEMESSVLNYLKFEMTAPTPKCFLRRFVRAAQGATDEVSSMQLECLANFLAELSLIEYSMLCYAPSLVAASAIFLAKFILLPTKRPWNSTLQHYTHYQPSDLVDCVKDLHRLCCNTHNSSLPAIREKYSQHKYKHVAKKYCPPTIPPEFFQNQTQ 501
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 17436528 17439580 + CmPI595203_08g005450.1 Cmu08g0545 422031
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0545 501 PIRSF Cyclin_A_B_D_E 4 494 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cmu08g0545 501 Gene3D - 249 362 - -
Cmu08g0545 501 SMART cyclin_7 271 355 IPR013763 -
Cmu08g0545 501 SMART cyclin_7 368 457 IPR013763 -
Cmu08g0545 501 Pfam Cyclin, N-terminal domain 235 362 IPR006671 -
Cmu08g0545 501 Gene3D - 235 484 - -
Cmu08g0545 501 MobiDBLite consensus disorder prediction 1 34 - -
Cmu08g0545 501 CDD CYCLIN_AtCycA-like_rpt2 364 479 - -
Cmu08g0545 501 SUPERFAMILY Cyclin-like 225 361 IPR036915 -
Cmu08g0545 501 CDD CYCLIN_AtCycA_like_rpt1 225 360 - -
Cmu08g0545 501 ProSitePatterns Cyclins signature. 266 297 IPR048258 -
Cmu08g0545 501 PANTHER CYCLINS 215 476 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cmu08g0545 501 FunFam Mitotic cyclin 6 249 349 - -
Cmu08g0545 501 FunFam Cyclin A1 351 484 - -
Cmu08g0545 501 Pfam Cyclin, C-terminal domain 364 485 IPR004367 -
Cmu08g0545 501 MobiDBLite consensus disorder prediction 1 32 - -
Cmu08g0545 501 SUPERFAMILY Cyclin-like 364 491 IPR036915 -
Cmu08g0545 501 SMART Cyclin_C_2 364 488 IPR004367 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2098 Cmu-Chr5:30546512 Cmu08g0545 Cmu-Chr8:17436528 1.10E-82 dispersed
Cmu07g0597 Cmu-Chr7:7763791 Cmu08g0545 Cmu-Chr8:17436528 8.90E-16 dispersed
Cmu08g0545 Cmu-Chr8:17436528 Cmu08g1563 Cmu-Chr8:27421620 4.00E-78 dispersed
Cmu08g0545 Cmu-Chr8:17436528 Cmu09g0226 Cmu-Chr9:2348197 3.20E-83 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0545 K06627 - csv:101221569 903.664