Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu08g0545 | ATGTCTGCCCATAATCGCCGCCCTTCGTTTTCGTCGTCGACATCCTCCTCGTTGGCCAAACGACAAGCGTCCTCGGCCTCGTCGTCAGACAATGTCGGAAAAGTTATGGCAGTTCCGCCACATTTGGCGAAGAAGCGAGCACCACTTGGTAACCTAACGAATTTTAAGAATGTGTCTCATAGCGCAGCCAAAAGCTCTGTTCCTCCTGCTATTATGGTGCCTTGTGCAACCAAAGCTGTCAAGGCTAGAAAGAGTTCCCCTGCTAGAACTCGCAGCACTAACTTGACGACGACTAATACAACCACATTGCTCGATGTCGAAACTACGAATGCAATTGCTCCTAGCAATGTTACAGCTTTCTCAAGAACTGATGCAACCGCTGTCTCTAGTTCTATGGATGTCTCTCCCTCTAAATCAGATGGAGTTTCAGTTTCCTTAGATGAAACTATGTCTACTTGCGATTCGTTTAAGAGTCCGGACGTCGAGTACTTGGACAATACTGATGTCCCAGCAGTTGATTCTGTTGAGAGGAAAACTAAAAGCAGTCTCTGCATTTCAGGTCCTGCACCAATTAGTAGTCAGGCACCAGTTAAAGGTAGTATATGCAATAGAGATGTAATTACAGAAATGGAAACAGATGGCGACATCGTTGATGTTGACACGGATTTCATGGATCCGCAGCAATGTGCTACAATTGCTTGTGACATTTACAAGCACTTACGAGCATCTGAGGCAAAGAAAAGGCCTTCAACAGATTTCATGGAGAAAATTCAGAAGGATATAAATTCAAATATGCGTGCCATACTGATCGATTGGCTTGTGGAGGTAGCAGAAGAGTATAGGCTTGTCCCAGATACTCTATATTTGACAGTAAACTACATTGATCGATACCTATCTGGAAATTCGATGGATCGACAACGATTACAATTGCTTGGTGTTGCTTGCATGATGATTGCCTCAAAATATGAAGAGATCTGTGCGCCTCAAGTGGAAGAATTTTGTTACATAACTGATAACACATATTTTAAAGACGAGGTATTGGAAATGGAATCTTCTGTCTTGAATTACTTGAAGTTCGAAATGACGGCCCCTACACCTAAATGTTTCTTAAGGCGATTTGTTCGTGCTGCTCAAGGCGCCACCGATGAGGTTTCATCAATGCAGTTGGAATGCTTGGCCAACTTCCTTGCTGAATTATCTCTTATAGAATACAGTATGCTCTGCTACGCACCATCGCTCGTAGCTGCCTCGGCGATCTTCTTGGCGAAGTTCATACTTCTTCCAACTAAGAGACCATGGAACTCCACCTTGCAACATTATACTCATTATCAGCCATCCGACCTTGTCGACTGCGTTAAGGATTTGCATCGCCTCTGCTGCAACACCCACAATTCTAGCTTACCAGCCATCAGAGAGAAATACAGCCAGCATAAGTACAAGCACGTGGCCAAGAAGTACTGCCCTCCGACGATACCGCCGGAGTTCTTCCAGAATCAAACACAGTAA | 1506 | 44.49 | MSAHNRRPSFSSSTSSSLAKRQASSASSSDNVGKVMAVPPHLAKKRAPLGNLTNFKNVSHSAAKSSVPPAIMVPCATKAVKARKSSPARTRSTNLTTTNTTTLLDVETTNAIAPSNVTAFSRTDATAVSSSMDVSPSKSDGVSVSLDETMSTCDSFKSPDVEYLDNTDVPAVDSVERKTKSSLCISGPAPISSQAPVKGSICNRDVITEMETDGDIVDVDTDFMDPQQCATIACDIYKHLRASEAKKRPSTDFMEKIQKDINSNMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNSMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKDEVLEMESSVLNYLKFEMTAPTPKCFLRRFVRAAQGATDEVSSMQLECLANFLAELSLIEYSMLCYAPSLVAASAIFLAKFILLPTKRPWNSTLQHYTHYQPSDLVDCVKDLHRLCCNTHNSSLPAIREKYSQHKYKHVAKKYCPPTIPPEFFQNQTQ | 501 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 17436528 | 17439580 | + | CmPI595203_08g005450.1 | Cmu08g0545 | 422031 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu08g0545 | 501 | PIRSF | Cyclin_A_B_D_E | 4 | 494 | IPR046965 | GO:0016538(InterPro)|GO:0044772(InterPro) | |
Cmu08g0545 | 501 | Gene3D | - | 249 | 362 | - | - | |
Cmu08g0545 | 501 | SMART | cyclin_7 | 271 | 355 | IPR013763 | - | |
Cmu08g0545 | 501 | SMART | cyclin_7 | 368 | 457 | IPR013763 | - | |
Cmu08g0545 | 501 | Pfam | Cyclin, N-terminal domain | 235 | 362 | IPR006671 | - | |
Cmu08g0545 | 501 | Gene3D | - | 235 | 484 | - | - | |
Cmu08g0545 | 501 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Cmu08g0545 | 501 | CDD | CYCLIN_AtCycA-like_rpt2 | 364 | 479 | - | - | |
Cmu08g0545 | 501 | SUPERFAMILY | Cyclin-like | 225 | 361 | IPR036915 | - | |
Cmu08g0545 | 501 | CDD | CYCLIN_AtCycA_like_rpt1 | 225 | 360 | - | - | |
Cmu08g0545 | 501 | ProSitePatterns | Cyclins signature. | 266 | 297 | IPR048258 | - | |
Cmu08g0545 | 501 | PANTHER | CYCLINS | 215 | 476 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Cmu08g0545 | 501 | FunFam | Mitotic cyclin 6 | 249 | 349 | - | - | |
Cmu08g0545 | 501 | FunFam | Cyclin A1 | 351 | 484 | - | - | |
Cmu08g0545 | 501 | Pfam | Cyclin, C-terminal domain | 364 | 485 | IPR004367 | - | |
Cmu08g0545 | 501 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cmu08g0545 | 501 | SUPERFAMILY | Cyclin-like | 364 | 491 | IPR036915 | - | |
Cmu08g0545 | 501 | SMART | Cyclin_C_2 | 364 | 488 | IPR004367 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu05g2098 | Cmu-Chr5:30546512 | Cmu08g0545 | Cmu-Chr8:17436528 | 1.10E-82 | dispersed | |
Cmu07g0597 | Cmu-Chr7:7763791 | Cmu08g0545 | Cmu-Chr8:17436528 | 8.90E-16 | dispersed | |
Cmu08g0545 | Cmu-Chr8:17436528 | Cmu08g1563 | Cmu-Chr8:27421620 | 4.00E-78 | dispersed | |
Cmu08g0545 | Cmu-Chr8:17436528 | Cmu09g0226 | Cmu-Chr9:2348197 | 3.20E-83 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu08g0545 | K06627 | - | csv:101221569 | 903.664 |