Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0566 ATGGGACGTTGGACGAAGACGCTTGTAAGAGTTTTGCTGATGATCATATTATCATCAGCCTCAGCGGCGGCTGTCGTAGTAGCTTCATCACAAGCCTTACCCGGCTGCGATGAATGGTGTGGCGACTTGCAAATTCCATATCCATTCGGCGTAAAAGAAGGGTGTTATCTGAATGAAACGTTCTTAATTACGTGCAACAAAAGCAATAGCCCTCCAAAAGCGTTTCTAATGGACACCAATATTAGCGTTACTAATGTATCACTCAACGGCGAGCTACACATATTGCAGCCCATAGTGCGAGATTGCTACGAGGAAGCGCAAGTAAGTGGTCCTTTTGTCCCCAACACAACCAATCTTTCTTTACCAGCGATGTTACCAATTGGTGATGGCAAAAACAAGTTCATTGCCATTGGCTGTGATACTTTTGGTTTAATTGGTGGGATGTTAAATGGGAGTGGTTATGTAAGTGGGTGTATTTCCATGTGTTTAAACGATAGTACGATTGTTAATGGGTCGTGCTCTGGTAATGGGTGTTGTCAATTGGAGATTCCAAATGGGTTGAGGAATTTGAGTTTGGCAGTGGGTAATTTCTTTGATCATTCTTTGGTGAAGAATTTTAATCCTTGTGGGTATGCTTTTGTGGTTGGAGATGAGGGGTTTGAGTTTGAGTCCAGGTATATTAGGAGTTTTGAAGATGTTGAAGTTGAGGTTGTGATTGGTTGGGCCATTGGAAATGAAAGTAATTATGCAAATTTGTGTGGATTAAATAGTGAAAGGAATAGTAGCTTCTCTAATGATGGAGCTGAATTTCGTTGCCAATGCTTGGATGGTTTTCAGGGGAATCCATATCTCCCACTGGGTTGTCAAGATATAGATGAATGCAAGGATGAAGCACTGAATCAGTGTAAGTACAAGAACAAGTGTGTTAACACAATAGGAAATTATACGTGCCATTGTCCTAAATACTTTAAAGGAGATGGAAGATATGGAGGAGAAGGTTGCACTCGAGATTCCAAGGCTTTCATTCCCATCATAATCGGAATTGGAGTAGGGTTCACAGTTTTATTAATTGGTAGCACATGGATATTCTTGGGTTATAAAAAGTGGAAGTTCATCAGAACGAAAGAAAAATTTTTCAAAGAAAATGGAGGTTTCATACTTCAACGACAACTTTCTCAATGGCAATCTCCCAATGAAATGGTCAGAATATTCACCCAAGAAGAGTTGGAGAAGGCCACAAACAACTACGACCAGAGCACTATCGTTGGCAAAGGTGGGTACGGCACTGTTTACAAAGGAGTCTTAGAAGATGGCTTGGCAGTGGCAATCAAGAAATCAAAATTTATAGACCAATCTCAAACTGACCAATTCATTAACGAAGTCATTGTTTTGTCTCAAATCAACCATCGCAATGTGGTTCGACTCTTGGGGTGTTGTTTAGAGACACAAGTCCCATTGTTGGTGTACGAGTTCGTAACCAACGGCACACTCTTCGAACATATCCATCACAAAACCAAGCATGCTTCTCTTTCATGGGAGGCTCGTTTGAAAATAGCTTTGGAGACTGCAGGTGTGCTTTCGTATTTGCATTCTTCAGCTTCCACTCCAATTATCCATAGAGATATCAAGACCACCAACATACTTTTAGACGATAGTTACACAGCGAAAGTGTCTGATTTTGGGGCATCGAAGTTGGTTCCAATGGATCAAACTCAGCTATCCACGATGGTGCAAGGGACTCTAGGGTATTTAGACCCTGAGTACTTGTTGACAAGCGAGTTAACGGAGAAGAGCGATGTGTATAGCTTTGGAATAGTGTTGTTAGAGCTTATAACTGGGAAGAAGGCGGTGTGTTTTGATGGGCCAGAAGCGGAGAGGAATCTAGCGATGTACGTGCTTTGTGCAATGAAGGAAGATCGATTGGAAGAAGTTGTGGAGAAGGGAATGATGGTGAAAGAGGCAAATTTTGATGAAATAAAAGAAGTGGCTAAGGTAGCAAAGAAATGCATAAAAATTAAAAGGGAGGAGCGACCCAGCATGAAGGAAGTAGCTATGGAGTTGGAGGGAGTTAGAGTAATGCAAGTTCAACATTCATGGATGAATAATAATAATTTGTCCAACGCAGATGAAATGGTATGTTTGTTGGATGTTAAAGCTTCAGACTCCAGCCATTTTGCTTCGAGTGGCACTATGAACACCCTTGGAGATAGCATAAAAACTCGAATTTTGTCACACATACACCATGGAAGATGA 2253 41.32 MGRWTKTLVRVLLMIILSSASAAAVVVASSQALPGCDEWCGDLQIPYPFGVKEGCYLNETFLITCNKSNSPPKAFLMDTNISVTNVSLNGELHILQPIVRDCYEEAQVSGPFVPNTTNLSLPAMLPIGDGKNKFIAIGCDTFGLIGGMLNGSGYVSGCISMCLNDSTIVNGSCSGNGCCQLEIPNGLRNLSLAVGNFFDHSLVKNFNPCGYAFVVGDEGFEFESRYIRSFEDVEVEVVIGWAIGNESNYANLCGLNSERNSSFSNDGAEFRCQCLDGFQGNPYLPLGCQDIDECKDEALNQCKYKNKCVNTIGNYTCHCPKYFKGDGRYGGEGCTRDSKAFIPIIIGIGVGFTVLLIGSTWIFLGYKKWKFIRTKEKFFKENGGFILQRQLSQWQSPNEMVRIFTQEELEKATNNYDQSTIVGKGGYGTVYKGVLEDGLAVAIKKSKFIDQSQTDQFINEVIVLSQINHRNVVRLLGCCLETQVPLLVYEFVTNGTLFEHIHHKTKHASLSWEARLKIALETAGVLSYLHSSASTPIIHRDIKTTNILLDDSYTAKVSDFGASKLVPMDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVCFDGPEAERNLAMYVLCAMKEDRLEEVVEKGMMVKEANFDEIKEVAKVAKKCIKIKREERPSMKEVAMELEGVRVMQVQHSWMNNNNLSNADEMVCLLDVKASDSSHFASSGTMNTLGDSIKTRILSHIHHGR 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17803497 17808395 - CmPI595203_08g005660.1 Cmu08g0566 422052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0566 750 FunFam Wall-associated receptor kinase 2 386 491 - -
Cmu08g0566 750 Gene3D Laminin 292 334 - -
Cmu08g0566 750 SMART serkin_6 416 700 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g0566 750 FunFam Fibrillin 2 285 330 - -
Cmu08g0566 750 Pfam Protein tyrosine and serine/threonine kinase 420 687 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu08g0566 750 SMART egfca_6 290 335 IPR001881 GO:0005509(InterPro)
Cmu08g0566 750 Gene3D Transferase(Phosphotransferase) domain 1 492 712 - -
Cmu08g0566 750 SUPERFAMILY Protein kinase-like (PK-like) 394 687 IPR011009 -
Cmu08g0566 750 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 32 700 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Cmu08g0566 750 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 308 319 IPR000152 -
Cmu08g0566 750 ProSitePatterns Protein kinases ATP-binding region signature. 422 445 IPR017441 GO:0005524(InterPro)
Cmu08g0566 750 CDD STKc_IRAK 422 689 - -
Cmu08g0566 750 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu08g0566 750 ProSiteProfiles Protein kinase domain profile. 416 700 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g0566 750 Gene3D Laminin 249 291 - -
Cmu08g0566 750 ProSiteProfiles EGF-like domain profile. 290 335 IPR000742 -
Cmu08g0566 750 ProSitePatterns Calcium-binding EGF-like domain signature. 290 317 IPR018097 GO:0005509(InterPro)
Cmu08g0566 750 Gene3D Phosphorylase Kinase; domain 1 388 491 - -
Cmu08g0566 750 CDD EGF_CA 290 326 - -
Cmu08g0566 750 FunFam Wall-associated receptor kinase 2 492 710 - -
Cmu08g0566 750 Pfam Wall-associated receptor kinase galacturonan-binding 36 90 IPR025287 GO:0030247(InterPro)
Cmu08g0566 750 Pfam Calcium-binding EGF domain 290 324 IPR049883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1676 Cmu-Chr3:20693611 Cmu08g0566 Cmu-Chr8:17803497 5.10E-50 dispersed
Cmu04g0834 Cmu-Chr4:22858253 Cmu08g0566 Cmu-Chr8:17803497 7.90E-79 dispersed
Cmu08g0566 Cmu-Chr8:17803497 Cmu08g0569 Cmu-Chr8:17863677 4.20E-265 dispersed
Cmu08g0572 Cmu-Chr8:17880200 Cmu08g0566 Cmu-Chr8:17803497 4.80E-11 dispersed
Cmu08g0566 Cmu-Chr8:17803497 Cmu08g0568 Cmu-Chr8:17844157 1.30E-269 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75708 PF07714 PK_Tyr_Ser-Thr 3.70E-48 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0566 - - - 0.0