Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0568 ATGAAGTCCTTAAATCCATCAAACAGCAACTTCAATTCCATTCCATCTCCAACCCCATTAGAAACTTTCATCCAAGACATGGGGCGTTCAATGGAGACGCTTATTCTACTCACCGTGGTGAAAATAGCCATCATATCAAGCGTTTTTGTCATGGCGGCGACAGCGGCGGTAGCTTCTCAAGCCTTACCCGAGTGCGATGAATGGTGTGGTGACGTGCAAATTCCATATCCATTCGGGACGAGGGAAGGGTGTTATCTGAATGAAACATTCTTCATTGAGTGTAACACAACTCATTACGATTCTCCAAAGGCATTTCTAACGGGCGGCAACGTTAATGTTACAAATATATCAATCTCGGGGGAGCTCCAAATCTTGAACTTAATGGCCCAAGATTGCTACCCGCCAAAAATTGGTGCTGATGTTTTTTCCTCCATCTTTCTCCATATACCTGGGTACACTATTTCCAGTACTAAAAACAAGTTCATTGCTATCGGCTGCGATACTCTCGGTTTTATTTCCGGCCAAAGCAAAGAAGACCAGTCCTTCACAACTGCATGTGTGGCATTGTGTGATGACATTAGCTCGGTTAAAGATGGGGCATGCTCTGGCAATGGGTGTTGTCAGTTGGAGATTCCCAGTGGCCTTAATTATTTGGAAATTCAGGTTAGCAGCTTAAGCAATCACACTAATGTGTCGAGTTTCAATCCTTGTGGTTATGCGTTTGTAATTGAACAACACAACTTCAACTTCTCCTCCAACTATATACGCAATTTTCCTCAAAACAGAATTTCGGCAGTGCTTGATTGGGCCATTACTAACACTACATGCGTAACGGCTAAGAACAAAACTAATTGTATATGTGGCCCAAATAGCACAAAGGTTGACTTGCTCGATGATAAATCTCAATATCTTTGCCGGTGCTTGGAAGGCTTTGAGGGGAATCCATATCTTCCTCAAGGTTGTCAAGATATAGATGAGTGCAAGGATGAAAGTCTTAATGAGTGCAAGTATGAGTGTGTTAATACAATAGGAAACTATACTTGCAATTGTCCAAAGGACTTTAAAGGAGATGGAAGACGTGGAGGAGAAGGTTGCACCCGAAACGCCAAGTCTTTTGTTCAAATCATTGTCGGAGTTACTGTGGGATTCACAGGTTTAGTAATTGGGAGTACATGGTTATACTTGGGTTACAGAAAGTGGAAGTTCATTAAACTGAAGGAGAAATTTTTTGAGAACAATGGTGGTTTGATGCTTCAAAAGCATCTTTCTCAATGGCAATCATCCACTGACATGGTTAGAATTTTCACTCAAGAGGAGCTGGACAAGGCTACAAACAAGTACAACGAAAGTGCAGTGGTTGGAAAAGGTGGCTACGGTACTGTTTACAAAGGAGTTTTAGACGACGGTTCGGTAGTTGCAATCAAGAAATCAAAATTGGTGGACCAATCCCAAACATCTCAATTCATTAACGAAGTCATTGTTCTGTCCCAAATCAACCACCGTAACGTGGTCAAGCTCTTAGGATGTTGTTTGGAGACACAAGTTCCATTGTTGGTGTACGAGTTCATCACCAATGGCACACTTTACGACCACGTCCATGGAAAAGCCAACCAAGATTCTCTTCCATGGGAAGCTCGTTTGAGAATAGCTTCAGAAACTGCAGGGGTGATTGCATATTTGCATTCTTCAGCTTCCACTCCCATTATTCATAGGGATATCAAGACAACCAACATACTTTTAGACCATAATTGTACTGCAAAGGTCTCTGATTTTGGTGCTTCCAAGTTGGTTCCCATAGATCAATCTCAGTTATCCACGATGGTGCTAGGAACTCTTGGATATTTAGACCCTGAATACTTGTTAACCAGCGAGTTGACAGAGAAGAGCGATGTGTATAGCTTTGGAATAGTGCTTCTAGAGCTTATAACAGGGAAGAAGGCAGTGAGTTTCGAGGGGCCAGAAGCGGAGAGGAACCTAGCCATGTATGTCCTATGTGCAATGAAGGAAGATCGTGTGGTAGAAGTTGTGGAAAAGGGAATGGCGACGGAAGCCAACATTGGGCAGATAAAAGAAGCGGCAAAGTTAGCAACAAAGTGTTTGAGAATAAGGGGGGAGGAACGGCCTAGCATGAAGGAGGTGGCCATGGAGTTGGAGGGGCTGAGAGTGTTGATTCAGGCTAATGAGAAATTAGAGAGCACAAGAGAGGAGATGATGGGTTATTTGGTGCAATCAGATGGAGGTTCAGAATCATCATCCAACCAACTTACTGCGAGTGGGAGCACAAATGCTGTGGATGATAGTATGAAGGTTCACATTTTGCCATTGATCCATAATGGAAGATGA 2343 42.98 MKSLNPSNSNFNSIPSPTPLETFIQDMGRSMETLILLTVVKIAIISSVFVMAATAAVASQALPECDEWCGDVQIPYPFGTREGCYLNETFFIECNTTHYDSPKAFLTGGNVNVTNISISGELQILNLMAQDCYPPKIGADVFSSIFLHIPGYTISSTKNKFIAIGCDTLGFISGQSKEDQSFTTACVALCDDISSVKDGACSGNGCCQLEIPSGLNYLEIQVSSLSNHTNVSSFNPCGYAFVIEQHNFNFSSNYIRNFPQNRISAVLDWAITNTTCVTAKNKTNCICGPNSTKVDLLDDKSQYLCRCLEGFEGNPYLPQGCQDIDECKDESLNECKYECVNTIGNYTCNCPKDFKGDGRRGGEGCTRNAKSFVQIIVGVTVGFTGLVIGSTWLYLGYRKWKFIKLKEKFFENNGGLMLQKHLSQWQSSTDMVRIFTQEELDKATNKYNESAVVGKGGYGTVYKGVLDDGSVVAIKKSKLVDQSQTSQFINEVIVLSQINHRNVVKLLGCCLETQVPLLVYEFITNGTLYDHVHGKANQDSLPWEARLRIASETAGVIAYLHSSASTPIIHRDIKTTNILLDHNCTAKVSDFGASKLVPIDQSQLSTMVLGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFEGPEAERNLAMYVLCAMKEDRVVEVVEKGMATEANIGQIKEAAKLATKCLRIRGEERPSMKEVAMELEGLRVLIQANEKLESTREEMMGYLVQSDGGSESSSNQLTASGSTNAVDDSMKVHILPLIHNGR 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17844157 17847551 + CmPI595203_08g005680.1 Cmu08g0568 422054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0568 780 SUPERFAMILY EGF/Laminin 322 358 - -
Cmu08g0568 780 ProSiteProfiles EGF-like domain profile. 323 357 IPR000742 -
Cmu08g0568 780 ProSiteProfiles Protein kinase domain profile. 447 724 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g0568 780 SMART egfca_6 323 366 IPR001881 GO:0005509(InterPro)
Cmu08g0568 780 CDD EGF_CA 323 357 - -
Cmu08g0568 780 CDD STKc_IRAK 453 720 - -
Cmu08g0568 780 SMART egf_5 326 366 IPR000742 -
Cmu08g0568 780 SMART egf_5 275 322 IPR000742 -
Cmu08g0568 780 FunFam Wall-associated receptor kinase 2 523 739 - -
Cmu08g0568 780 FunFam Wall-associated receptor kinase 2 417 522 - -
Cmu08g0568 780 Gene3D Transferase(Phosphotransferase) domain 1 523 741 - -
Cmu08g0568 780 FunFam Fibrillin 2 318 361 - -
Cmu08g0568 780 Gene3D Plasmodium vivax P25 domain 262 371 - -
Cmu08g0568 780 Pfam Wall-associated receptor kinase galacturonan-binding 65 120 IPR025287 GO:0030247(InterPro)
Cmu08g0568 780 Pfam Protein kinase domain 447 713 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g0568 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 568 580 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu08g0568 780 SUPERFAMILY Protein kinase-like (PK-like) 425 718 IPR011009 -
Cmu08g0568 780 Gene3D Phosphorylase Kinase; domain 1 418 522 - -
Cmu08g0568 780 ProSitePatterns Calcium-binding EGF-like domain signature. 323 348 IPR018097 GO:0005509(InterPro)
Cmu08g0568 780 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 61 733 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Cmu08g0568 780 SMART serkin_6 447 724 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g0568 780 ProSitePatterns Protein kinases ATP-binding region signature. 453 476 IPR017441 GO:0005524(InterPro)
Cmu08g0568 780 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 339 350 IPR000152 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0227 Cmu-Chr6:2477964 Cmu08g0568 Cmu-Chr8:17844157 4.00E-35 dispersed
Cmu08g0568 Cmu-Chr8:17844157 Cmu11g1898 Cmu-Chr11:30986988 2.90E-184 dispersed
Cmu11g0958 Cmu-Chr11:13461373 Cmu08g0568 Cmu-Chr8:17844157 2.00E-63 dispersed
Cmu08g0566 Cmu-Chr8:17803497 Cmu08g0568 Cmu-Chr8:17844157 1.30E-269 proximal
Cmu08g0568 Cmu-Chr8:17844157 Cmu08g0569 Cmu-Chr8:17863677 8.60E-261 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75709 PF00069 Pkinase 4.50E-48 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0568 - - - 0.0