Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0569 ATGAGACGTCCAACCGCCGAGACGCTTGTGGTTCACATAGCCATCTTTTCAGCGGTGGTGGCGGCGACAGTAGCTTCGCAAGCCAAACCCGGGTGTGAAAGTAAGTGTGGGAACTTGGAAATTCCATATCCGTTCGGGATGAAGGAAGGGTGTTATCTCAACATTAATTTCTCTGTCACCTGCAAAACAAATCATTTGGACTCCCCAAAGGCATTTCTAGTGAACAGCAACATTGAAGTAATCAATATATCCCTCTATGGCGAGCTCAACATCTTGAACTACGTAGCCCGAGATTGCTACACAAAAGATGGCCTTCCTGACATCAACAACAACAGACCAAGTCTCAGGGTGCCCATGTTCACAATTTCCAATACAAAGAACAAGTTAACCGTCGTCGGCTGCGACACTTACGCTTATATTTACGGTCAACTTGAGGAGGGATCCTACACAAGTGGGTGCATGGGGTTGTGTGGAAACAGTAGTAGAGCTATAAAAGATGGGTCCTGCTCTGGGAGTGGGTGCTGTCAATTGGAGATTCCCAAAGGCCTAAGAAATTTGGAGTTGGAGGTGAGAAGCTTCAAAAATCATACTCAAGTACACAGCTTCAATCCATGTGGGCATGCTTTTGTAGTCCAACAAGACAATTTTACTTTCTCTACTAAATATATTGAAAACTTCACGGAAGACAAAGTTCCGCTAGTGCTTGATTGGGGCATCAAAAAAGGTGCTTGCTTAACAGACCAATGTCCATGTGGACCAAACAGCAAAAGAAATAATAGCAAATCCCTTGATGGATCTGAATATTATTGTGACTGCTTGGATGGTTTTCGTGGAAATCCTTATCTCCCTCAAGGTTGTCAAGATATAAATGAATGCGAAGAGGGGTCCCATGACTGTGTACCCCAAGCTAAGTGTGAAGACAAACCAGGAAACTATATCTGCTCTTGTCCTGAGAAGTATGAAGGAGATGGAAAACTTGGGGGAACAGGTTGCAAACGAAAGTACTCCAACTCCATGTTCATTAAAATTATCATTGGAACTGGTGTGGGGTTTGTAGTTTTACTGATTGGTATCTCATGGTTATACTTGGGTTACAAGAAGTTGAAGTTCCTCCAACAGAAAGAAAAGTTTTTCAAGAAAAATGGAGGCTCCATGCTTCAACAACACCTTTCTCAGTGGCAATCACCTGCTGACACAGTCAGAATTTTCAGCCAAGAGGAGTTGGAAAAAGCTACAAACAAGTTCAATGAAAGCACAGTGGTAGGAAAAGGTGGCTACGGCACTGTTCACAAAGGAGTCTTAGACGACGGTTCGGTTGTCGCGATTAAGAAGTCACAATTAGTGGACCAATCCCAAACTTCCCAATTCATCAACGAAGTAATTGTTCTATCCCAAGTCAACCACCGTAATGTGGTCAAGCTCTTAGGATGTTGTTTGGAGACACAAGTTCCATTGTTGGTATACGAGTTCATCACCAATGGCACACTCTTTGACCACATCCATGACCGAACAAAGTATTCAAATCATCTTTCCTGGGAAGCTCGCTTGAGAATAGCTTCAGAAACTGCAGGGGTCATTTCATATTTGCATTCTTCAGCTTCTACACCAATTATCCACAGAGATATCAAATCCACTAACATACTTTTAGACCATAATTTCGTTGCAAACGTGTCAGATTTCGGCGCCTCGAAATTGGTTCCAATGGATCAAACTCAATTATCCACAATGATGCAAGGAACCCTTGGATATTTGGATCCTGAATACTTGTTAACAAGCGAGTTGACGGAGAAGAGCGATGTGTACAGCTTTGGAATAGTGGTTCTAGAGCTTATAACTGGGAAAAAAGCAGTGTGTTTTGATGGGCCAGAAGTGGTGAGGAATCTAGCCATGTATGTCCTTCGTGCAATGAAAGAAGATTGTTTAGTAGAAGTTGTAGATAAGGAAATGATGATGGACGAAGGGAAGTTGAACCAAATAAAAGAAGTGGCAAAGATAGCCAAAGAGTGTGTGAGAGTGAAAGGGGAGGAGCGGCCTAGCATGAAAGAGGTGGCTATGGAGTTAGAGGGACTGAGAGTAATGCAGGTTCAACATTCATGGGTTAACAACAATTTATCCAACTCAGAAGAGATGATAAGTTTATTGGATGAAACTTCAAACTCCACCCAATTTCTCGTCGGCAGTAGTATCAATGCCATGGACAATAGTATAAAGACTCACATTTCGACAACACATATTCCAAATGCAAGGTGA 2250 42.53 MRRPTAETLVVHIAIFSAVVAATVASQAKPGCESKCGNLEIPYPFGMKEGCYLNINFSVTCKTNHLDSPKAFLVNSNIEVINISLYGELNILNYVARDCYTKDGLPDINNNRPSLRVPMFTISNTKNKLTVVGCDTYAYIYGQLEEGSYTSGCMGLCGNSSRAIKDGSCSGSGCCQLEIPKGLRNLELEVRSFKNHTQVHSFNPCGHAFVVQQDNFTFSTKYIENFTEDKVPLVLDWGIKKGACLTDQCPCGPNSKRNNSKSLDGSEYYCDCLDGFRGNPYLPQGCQDINECEEGSHDCVPQAKCEDKPGNYICSCPEKYEGDGKLGGTGCKRKYSNSMFIKIIIGTGVGFVVLLIGISWLYLGYKKLKFLQQKEKFFKKNGGSMLQQHLSQWQSPADTVRIFSQEELEKATNKFNESTVVGKGGYGTVHKGVLDDGSVVAIKKSQLVDQSQTSQFINEVIVLSQVNHRNVVKLLGCCLETQVPLLVYEFITNGTLFDHIHDRTKYSNHLSWEARLRIASETAGVISYLHSSASTPIIHRDIKSTNILLDHNFVANVSDFGASKLVPMDQTQLSTMMQGTLGYLDPEYLLTSELTEKSDVYSFGIVVLELITGKKAVCFDGPEVVRNLAMYVLRAMKEDCLVEVVDKEMMMDEGKLNQIKEVAKIAKECVRVKGEERPSMKEVAMELEGLRVMQVQHSWVNNNLSNSEEMISLLDETSNSTQFLVGSSINAMDNSIKTHISTTHIPNAR 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17863677 17866823 + CmPI595203_08g005690.1 Cmu08g0569 422055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0569 749 SUPERFAMILY Protein kinase-like (PK-like) 394 688 IPR011009 -
Cmu08g0569 749 Gene3D Laminin 242 327 - -
Cmu08g0569 749 FunFam Wall-associated receptor kinase 2 385 490 - -
Cmu08g0569 749 Gene3D Transferase(Phosphotransferase) domain 1 491 711 - -
Cmu08g0569 749 SMART egfca_6 288 332 IPR001881 GO:0005509(InterPro)
Cmu08g0569 749 SUPERFAMILY EGF/Laminin 287 323 - -
Cmu08g0569 749 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 305 316 IPR000152 -
Cmu08g0569 749 ProSitePatterns Protein kinases ATP-binding region signature. 421 444 IPR017441 GO:0005524(InterPro)
Cmu08g0569 749 Pfam Wall-associated receptor kinase galacturonan-binding 32 85 IPR025287 GO:0030247(InterPro)
Cmu08g0569 749 FunFam Fibrillin 2 283 327 - -
Cmu08g0569 749 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu08g0569 749 SMART serkin_6 415 700 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g0569 749 SMART egf_5 291 332 IPR000742 -
Cmu08g0569 749 SMART egf_5 243 287 IPR000742 -
Cmu08g0569 749 FunFam Wall-associated receptor kinase 2 491 711 - -
Cmu08g0569 749 CDD EGF_CA 288 323 - -
Cmu08g0569 749 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 28 702 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Cmu08g0569 749 ProSitePatterns Calcium-binding EGF-like domain signature. 288 314 IPR018097 GO:0005509(InterPro)
Cmu08g0569 749 Pfam Protein tyrosine and serine/threonine kinase 419 687 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu08g0569 749 Pfam EGF domain 292 325 IPR024731 -
Cmu08g0569 749 Gene3D Phosphorylase Kinase; domain 1 387 490 - -
Cmu08g0569 749 ProSiteProfiles EGF-like domain profile. 288 323 IPR000742 -
Cmu08g0569 749 CDD STKc_IRAK 421 690 - -
Cmu08g0569 749 ProSiteProfiles Protein kinase domain profile. 415 700 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0566 Cmu-Chr8:17803497 Cmu08g0569 Cmu-Chr8:17863677 4.20E-265 dispersed
Cmu08g0569 Cmu-Chr8:17863677 Cmu11g1898 Cmu-Chr11:30986988 1.60E-179 dispersed
Cmu08g0569 Cmu-Chr8:17863677 Cmu08g0571 Cmu-Chr8:17871740 3.90E-154 proximal
Cmu08g0568 Cmu-Chr8:17844157 Cmu08g0569 Cmu-Chr8:17863677 8.60E-261 tandem
Cmu08g0569 Cmu-Chr8:17863677 Cmu08g0570 Cmu-Chr8:17870964 3.80E-15 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75710 PF07714 PK_Tyr_Ser-Thr 1.30E-45 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0569 - - - 0.0