Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0571 ATGATGAATCTCAATATCGGTCCATATCTCTCTGAAGGTTGTCAAGATGTAAATGAATGCAAGGATACAAGGTTGAATGATTGTGAACATAAACAGATGTGTGTTAACACACAAGGAAATTTTACCTGCTCTTGTCCTAAGAACTATAAAGGAGATGGAAGAAACAAGGGAAAAGGATGCATTCCAACCTATAAGGCCTTCGATCAATACGTCATCGGATGTACTGTAGGGTTAACACTTTTAGTAATTGGGTGCACATTGTTATGCTTGGGTTACGCAAAGTGGAAGGCCATCCACCAAAAGAAATATTTTTTCAAGAAAAATGGAGGTTTGGTGCTTGAACAACATCTTTCCGAGTGGGAATCACCGGTGGAGATGTTCAGAATTTTCACCCATGAAGAGTTGAAGAAGGCTACAAACAAGTTCCATGATAGCGCAGTGGTGGGAAAAGGTGGCTTTGGCACCGTTTACAAAGGCGTCTTAGATGATGGCTTGATAATTGCAATCAAGAAATCGAAATTAGTAGACCAATCCCAAACGGACCAATTCATTAATGAAGTCATTGTTCTGTCTCAAATCAACCATCGCAACGTGGTCAAGCTGCTGGGGTGCTGTTTGGAGACAAAAGTTCCTTTGTTGGTCTACGAGTTTGTAACCAATGGCACTCTCTTTGAACACATCCACAACAAAACAAACCATGCTCCTCTTTCCTGGGAAACTCGATTGAAGATAGCTTCAGAAATTGCTAGCGTCCTTGCATATTTGCATTCTTCCACTTCTACTCCCATCATCCACAGAGATATCAAGTCTTCTAATGTACTTTTAGACCATGATTACACAGCAAAGCTGTCTGATTTTGGAGCTTCAAAACTGGTACCGTTGGATCATACTCAGCTTTCCACGATGATGCAAGGGACTCTTGGATATTTGGACCCTGAGTACTTGTTGACAAGTGAGTTGACGGAGAAAAGTGACGTGTACAGCTTCGGAATTTTGCTTTTTGAGCTTATCACGGGAAAGAAGGCAGTGCGTTTTGATGTCCCAGAAGAAGAAAGAACTCTAGGCAAGATAGTTCTGTGTGCAATGAATGAAGATCGTTTGGAAGAAATTGTTGAGGAGGGATTGGCAACAGAAGCAAATATTGAGGAGATACAAGAGGTGGCAAAGCTAGCAAAAGAGTGTGTAAGAGTTAAAGGGGAGGAGCGCCCCACCATGAAGGAGGTGGCTATAAAGTTGGAGGAGCTGCGAATGTTACATGCTTGA 1263 41.96 MMNLNIGPYLSEGCQDVNECKDTRLNDCEHKQMCVNTQGNFTCSCPKNYKGDGRNKGKGCIPTYKAFDQYVIGCTVGLTLLVIGCTLLCLGYAKWKAIHQKKYFFKKNGGLVLEQHLSEWESPVEMFRIFTHEELKKATNKFHDSAVVGKGGFGTVYKGVLDDGLIIAIKKSKLVDQSQTDQFINEVIVLSQINHRNVVKLLGCCLETKVPLLVYEFVTNGTLFEHIHNKTNHAPLSWETRLKIASEIASVLAYLHSSTSTPIIHRDIKSSNVLLDHDYTAKLSDFGASKLVPLDHTQLSTMMQGTLGYLDPEYLLTSELTEKSDVYSFGILLFELITGKKAVRFDVPEEERTLGKIVLCAMNEDRLEEIVEEGLATEANIEEIQEVAKLAKECVRVKGEERPTMKEVAIKLEELRMLHA 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17871740 17873739 + CmPI595203_08g005710.1 Cmu08g0571 422057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0571 420 Gene3D Phosphorylase Kinase; domain 1 114 217 - -
Cmu08g0571 420 Pfam Calcium-binding EGF domain 16 53 IPR049883 -
Cmu08g0571 420 ProSitePatterns Calcium-binding EGF-like domain signature. 16 43 IPR018097 GO:0005509(InterPro)
Cmu08g0571 420 ProSiteProfiles Protein kinase domain profile. 142 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g0571 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu08g0571 420 CDD STKc_IRAK 148 415 - -
Cmu08g0571 420 Pfam Protein tyrosine and serine/threonine kinase 146 411 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu08g0571 420 FunFam Wall-associated receptor kinase 2 112 217 - -
Cmu08g0571 420 CDD EGF_CA 16 52 - -
Cmu08g0571 420 ProSiteProfiles EGF-like domain profile. 16 55 IPR000742 -
Cmu08g0571 420 ProSitePatterns Protein kinases ATP-binding region signature. 148 171 IPR017441 GO:0005524(InterPro)
Cmu08g0571 420 SUPERFAMILY EGF/Laminin 13 53 - -
Cmu08g0571 420 SMART egfca_6 16 61 IPR001881 GO:0005509(InterPro)
Cmu08g0571 420 Gene3D Transferase(Phosphotransferase) domain 1 218 419 - -
Cmu08g0571 420 Gene3D Laminin 8 56 - -
Cmu08g0571 420 FunFam Wall-associated receptor kinase 2 218 420 - -
Cmu08g0571 420 SMART serkin_6 142 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g0571 420 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 34 45 IPR000152 -
Cmu08g0571 420 FunFam Fibrillin 2 11 56 - -
Cmu08g0571 420 SUPERFAMILY Protein kinase-like (PK-like) 118 414 IPR011009 -
Cmu08g0571 420 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 31 416 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0571 Cmu-Chr8:17871740 Cmu11g0957 Cmu-Chr11:13432391 5.10E-119 dispersed
Cmu08g0569 Cmu-Chr8:17863677 Cmu08g0571 Cmu-Chr8:17871740 3.90E-154 proximal
Cmu08g0571 Cmu-Chr8:17871740 Cmu08g0574 Cmu-Chr8:17900906 1.00E-111 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75711 PF00069 Pkinase 2.00E-50 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0571 - - - 0.0