Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0574 ATGGCAATCACCCGACATGCTCAAAATTTTCACCCAAGAAGAGTTGGAGAAGGCTACAAACAAGTACGACGAAAGCACAGTGGTTGGCAAAAGTATGACGGTTTGGCAGTTGCAATCAAGAAATCAAAATTAGTGAACCAATCCCAAACTGACCAGTTCATTAACGAAGTCATCGTTTTGTCCCAAATCAACCATCGCATCGTGGTCAAACTCATAGGGTGTTGTTTGGAGACAAAGGTTCCATTGTTGGTGTACGAGTTCGTGACCAACGGCACACTCTTTGAACACATCCACCGCAAAACCAACCATGCTTATCTCCCATGGGAAGCTCGCTTGAAAATAGCTTCGGAAATTGCCGGCGTCCTTTCATATTTGCATTCTTCCGCTTCTACTCCAATTATCCATAGAGATATCAAGTCCAATAATATACTTTTAGACCAAAACTACACAGCAAAAGTCTCTGATTTCGGAACGTCAAAGCTTGTTCCGTTGGATCAAACTCAAATATCCACAATGGTGCAAGGGACAGTTGGGTATTTGGATCCAGAATATTTTTTGACGAGTGAGTTGACGGAGAAAAGCGATGTGTATAGCTTTGGGATTGTACTTCTAGAGCTTGTAACGGGGAAGAAGGCAGTGTGTTTTGATGGGCCAGAAGAAGAGAGGAATCTAGCGATGTATGTGCTGTTTGCAATGGAAGAAGATTGTGTGGAAGAAGTTGTGGAGAAGGGAATGGCGACAGAAGGAAACTTTGAGCAAATAAAAGAAGTGGCAAAACTGGCAAGAGAGTGTGTGAAAGTAAAAAGGGCGGAGCGGCCAACCATGAAGGAGGTAGCTATGGAGTTGGAGGGACTGAAACTGATGCAGGTTGAAAACTGTTCATGGGATAGAAGCAATTTGTTCGATGGAGCTTTAAACTCAAGCCAACATGTTTCCAATGATACGGACGAGAGCATCGAAAGCTGA 966 43.48 MAITRHAQNFHPRRVGEGYKQVRRKHSGWQKYDGLAVAIKKSKLVNQSQTDQFINEVIVLSQINHRIVVKLIGCCLETKVPLLVYEFVTNGTLFEHIHRKTNHAYLPWEARLKIASEIAGVLSYLHSSASTPIIHRDIKSNNILLDQNYTAKVSDFGTSKLVPLDQTQISTMVQGTVGYLDPEYFLTSELTEKSDVYSFGIVLLELVTGKKAVCFDGPEEERNLAMYVLFAMEEDCVEEVVEKGMATEGNFEQIKEVAKLARECVKVKRAERPTMKEVAMELEGLKLMQVENCSWDRSNLFDGALNSSQHVSNDTDESIES 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17900906 17901871 + CmPI595203_08g005740.1 Cmu08g0574 422060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0574 321 FunFam Wall-associated receptor kinase 2 88 301 - -
Cmu08g0574 321 SUPERFAMILY Protein kinase-like (PK-like) 28 298 IPR011009 -
Cmu08g0574 321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu08g0574 321 PIRSF ILK 11 302 - -
Cmu08g0574 321 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Cmu08g0574 321 ProSiteProfiles Protein kinase domain profile. 4 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g0574 321 Pfam Protein tyrosine and serine/threonine kinase 30 282 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu08g0574 321 Gene3D Transferase(Phosphotransferase) domain 1 88 301 - -
Cmu08g0574 321 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 32 292 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Cmu08g0574 321 SMART serkin_6 19 288 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g0574 321 FunFam Wall-associated receptor kinase-like 10 31 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0574 Cmu-Chr8:17900906 Cmu11g0957 Cmu-Chr11:13432391 7.50E-94 dispersed
Cmu08g0571 Cmu-Chr8:17871740 Cmu08g0574 Cmu-Chr8:17900906 1.00E-111 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75712 PF07714 PK_Tyr_Ser-Thr 1.50E-44 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0574 - - - 0.0