Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0640 ATGATGGATTTGAACTTTACCTCCCGGAAGCCACCGCAGACGGCGCCGAGGATGGACATCGAACAGATGCCGGAGGCTCCACACCGTGGGTATCACCACCGCCGTTCCCACTCCGATACCTCCTTCCGCTTCGCTAATTTTGACGATCTCCTCCTCTTCGACCCTCCCGACATCGATTTATCATCTGCTCTTCCTTCTCCCTCGCCGTCACCGTCTCCGACGCCGTCAGGGGCTCGTATGGCCGTCGATTCCTTCAACTCGAGGTCCCCTGAAGACGTCTCTGACACAAAACCTAGGGCTGGAAACGGTAACTCCGCTTCCTTCTTCAGTTCTCACTACCGGAGCTTGTCGATGGACTCCGACTTCTTTGAGGGATTGGGGATGGCCGGAGATGGGAGTGACGGTGAAGTACTTGGCGGGAGAGTGACGGCGGGGGAGAAGAAGATGAGTCGCCATAGGCATAGCAATTCCATGGATGGGTCTTTGACCTCCTCGTTTGAAGCTAATTCCACCAAGAAAGCCATGGCACCTGATAAACTCGCTGAGCTTGCTTTGATGGACCCTAAAAGAGCTAAGAGGATTCTGGCAAATAGACAATCAGCTGCACGATCCAAGGAGAGGAAAATACGTTACACTAATGAACTAGAGAAGAAGGTGCAGATGCTTCAGTCAGAAGCCACTTCCCTTTCTGCTCAGGTCACAGTGTTACAGAGAGATAACACTGGATTGACTACTGAGAACAGAGAACTCAAGCTAAGGTTGCAAGCCATGGAGCAGCAAGCCCATCTGAGGGATGCTTTGAATGAGACACTGAAGGAGGAAGTGCAGCGGCTTAAGATAGTTGCGGCCCAACTGCCTGTTGCAAATGGCAACTCATTCAACATTAGAGGAGTGCTACCTCCTCAATTCCCTCCTCTCCAAACATCATCATTGCTTCAATTTGGCAACTCCCAGAATCATCATCAACAGCCACAACTGCTTCACATGTCTCAGCCTGATGCTCGGGGAGGGTCTCCCCCGTCCCAGCCTCCCGGAGTTTAA 1041 52.16 MMDLNFTSRKPPQTAPRMDIEQMPEAPHRGYHHRRSHSDTSFRFANFDDLLLFDPPDIDLSSALPSPSPSPSPTPSGARMAVDSFNSRSPEDVSDTKPRAGNGNSASFFSSHYRSLSMDSDFFEGLGMAGDGSDGEVLGGRVTAGEKKMSRHRHSNSMDGSLTSSFEANSTKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEKKVQMLQSEATSLSAQVTVLQRDNTGLTTENRELKLRLQAMEQQAHLRDALNETLKEEVQRLKIVAAQLPVANGNSFNIRGVLPPQFPPLQTSSLLQFGNSQNHHQQPQLLHMSQPDARGGSPPSQPPGV 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18607063 18608711 - CmPI595203_08g006400.1 Cmu08g0640 422126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0640 346 SUPERFAMILY Leucine zipper domain 189 241 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0640 346 MobiDBLite consensus disorder prediction 75 89 - -
Cmu08g0640 346 MobiDBLite consensus disorder prediction 61 106 - -
Cmu08g0640 346 Pfam bZIP transcription factor 189 246 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0640 346 MobiDBLite consensus disorder prediction 315 329 - -
Cmu08g0640 346 MobiDBLite consensus disorder prediction 1 37 - -
Cmu08g0640 346 SMART brlzneu 185 249 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0640 346 MobiDBLite consensus disorder prediction 315 346 - -
Cmu08g0640 346 CDD bZIP_plant_RF2 190 241 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0640 346 Coils Coil 212 232 - -
Cmu08g0640 346 Gene3D - 188 239 - -
Cmu08g0640 346 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 187 250 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0640 346 Coils Coil 240 260 - -
Cmu08g0640 346 FunFam Transcription factor VIP1 188 241 - -
Cmu08g0640 346 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 19 329 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0479 Cmu-Chr2:4330273 Cmu08g0640 Cmu-Chr8:18607063 5.20E-42 dispersed
Cmu02g0480 Cmu-Chr2:4342490 Cmu08g0640 Cmu-Chr8:18607063 2.20E-40 dispersed
Cmu07g0562 Cmu-Chr7:6859893 Cmu08g0640 Cmu-Chr8:18607063 9.20E-50 dispersed
Cmu08g0640 Cmu-Chr8:18607063 Cmu09g0925 Cmu-Chr9:9222130 3.90E-88 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6644 PF00170 bZIP_1 3.90E-07 CL0018 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0640 K20557 - csv:101215277 493.041