Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0647 ATGATGGATTTCGGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCAAGGCGTAGTTTTGAGACTAGCCGTTGGGCTAGCCTTCCCCCCGAATTATTATGTGACGTGGTCCGAAGACTGGAGGCGAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGCAAAGAAATGGTCAAAAGCCCTGAGTTGTCTGGGAAAATTACCTTCCCAATCGCCTTGAAGCAGCCTGGGCCGCGTGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCCAATTTAACTTATCATCTTTATCTTTGCCTTAGTCCTGCTTTACTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAAAGGACCAGGAGAACTACTTCTACAGAGTATGTTATATCATTGGCTGCGGACGATATTTCAAGATCAAGCAACGGTTATATAGGAAAGCTAAGATCAAATTTTCTAGGAACCAAGTTCATTATATATGATACACAGCCTCCTTACAACAGCAACCAAATCCCGACCCTCGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTCTCACCTAAGGTCCCAGCTGGAAGCTACAGCATTGCACAAATTGCATATGAGTTGAATGTATTAGGTACGAGGGGACCCCGGAGAATGAACTGCACCATGTACTCAATCCCCACTTCATCTCTTGAGCCAGGTTGCTCGGTTCCAGGCCAGCCCGAGCTCAATCCTCGCCCCCTCGAAGACTCATTTCGTAGCATCTCATTCTCCAAGTCAATTGATCATTCAACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAATGCTTGTTGACGAAGATGGCGATGTGAAGGATGGACCCTTGATTCTCCGGAACAAGGCACCTAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAATTTTCGTGGGAGGGTGACAGTTGCATCTGTAAAGAACTTTCAGCTGATCGCTGCAACCTCACCTGCTGCAGAAGCCCCCATACCGTCGCAGCCGCCTCCTCAGCCAGCCCAACCTACCCATTCTGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTCGGTAAGGACATGTTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACAAAATTGGCATGTGAATAG 1221 47.09 MMDFGILRDVRDGFGSLSRRSFETSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEMVKSPELSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMNCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLVDEDGDVKDGPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPIPSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18687510 18691398 + CmPI595203_08g006470.1 Cmu08g0647 422133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0647 406 Gene3D Tubby Protein; Chain A 87 400 IPR025659 -
Cmu08g0647 406 SUPERFAMILY F-box domain 19 70 IPR036047 GO:0005515(InterPro)
Cmu08g0647 406 SUPERFAMILY Tubby C-terminal domain-like 76 406 IPR025659 -
Cmu08g0647 406 PRINTS Tubby superfamily signature 208 235 IPR000007 -
Cmu08g0647 406 PRINTS Tubby superfamily signature 321 337 IPR000007 -
Cmu08g0647 406 PRINTS Tubby superfamily signature 363 382 IPR000007 -
Cmu08g0647 406 PRINTS Tubby superfamily signature 384 406 IPR000007 -
Cmu08g0647 406 PRINTS Tubby superfamily signature 303 320 IPR000007 -
Cmu08g0647 406 PRINTS Tubby superfamily signature 143 159 IPR000007 -
Cmu08g0647 406 PRINTS Tubby superfamily signature 159 183 IPR000007 -
Cmu08g0647 406 ProSitePatterns Tub family signature 2. 391 406 IPR018066 -
Cmu08g0647 406 ProSitePatterns Tub family signature 1. 321 334 IPR018066 -
Cmu08g0647 406 CDD F-box_AtTLP-like 27 71 - -
Cmu08g0647 406 Gene3D - 20 77 - -
Cmu08g0647 406 PANTHER TUBBY-RELATED 23 405 - -
Cmu08g0647 406 MobiDBLite consensus disorder prediction 343 362 - -
Cmu08g0647 406 Pfam F-box-like 27 70 IPR001810 GO:0005515(InterPro)
Cmu08g0647 406 FunFam Tubby-like F-box protein 84 406 - -
Cmu08g0647 406 Pfam Tub family 88 401 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1935 Cmu-Chr5:29236522 Cmu08g0647 Cmu-Chr8:18687510 3.60E-117 dispersed
Cmu07g1018 Cmu-Chr7:24918032 Cmu08g0647 Cmu-Chr8:18687510 2.00E-98 dispersed
Cmu08g0328 Cmu-Chr8:8854832 Cmu08g0647 Cmu-Chr8:18687510 2.00E-182 dispersed
Cmu08g0647 Cmu-Chr8:18687510 Cmu09g0329 Cmu-Chr9:3150997 2.20E-10 dispersed
Cmu08g0647 Cmu-Chr8:18687510 Cmu05g0635 Cmu-Chr5:5459149 1.70E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6646 PF01167 Tub 8.80E-116 CL0395 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0647 K19600 - csv:101203074 774.622