Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu08g0647 | ATGATGGATTTCGGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCAAGGCGTAGTTTTGAGACTAGCCGTTGGGCTAGCCTTCCCCCCGAATTATTATGTGACGTGGTCCGAAGACTGGAGGCGAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGCAAAGAAATGGTCAAAAGCCCTGAGTTGTCTGGGAAAATTACCTTCCCAATCGCCTTGAAGCAGCCTGGGCCGCGTGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCCAATTTAACTTATCATCTTTATCTTTGCCTTAGTCCTGCTTTACTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAAAGGACCAGGAGAACTACTTCTACAGAGTATGTTATATCATTGGCTGCGGACGATATTTCAAGATCAAGCAACGGTTATATAGGAAAGCTAAGATCAAATTTTCTAGGAACCAAGTTCATTATATATGATACACAGCCTCCTTACAACAGCAACCAAATCCCGACCCTCGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTCTCACCTAAGGTCCCAGCTGGAAGCTACAGCATTGCACAAATTGCATATGAGTTGAATGTATTAGGTACGAGGGGACCCCGGAGAATGAACTGCACCATGTACTCAATCCCCACTTCATCTCTTGAGCCAGGTTGCTCGGTTCCAGGCCAGCCCGAGCTCAATCCTCGCCCCCTCGAAGACTCATTTCGTAGCATCTCATTCTCCAAGTCAATTGATCATTCAACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAATGCTTGTTGACGAAGATGGCGATGTGAAGGATGGACCCTTGATTCTCCGGAACAAGGCACCTAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAATTTTCGTGGGAGGGTGACAGTTGCATCTGTAAAGAACTTTCAGCTGATCGCTGCAACCTCACCTGCTGCAGAAGCCCCCATACCGTCGCAGCCGCCTCCTCAGCCAGCCCAACCTACCCATTCTGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTCGGTAAGGACATGTTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACAAAATTGGCATGTGAATAG | 1221 | 47.09 | MMDFGILRDVRDGFGSLSRRSFETSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEMVKSPELSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMNCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLVDEDGDVKDGPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPIPSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 406 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 18687510 | 18691398 | + | CmPI595203_08g006470.1 | Cmu08g0647 | 422133 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu08g0647 | 406 | Gene3D | Tubby Protein; Chain A | 87 | 400 | IPR025659 | - | |
Cmu08g0647 | 406 | SUPERFAMILY | F-box domain | 19 | 70 | IPR036047 | GO:0005515(InterPro) | |
Cmu08g0647 | 406 | SUPERFAMILY | Tubby C-terminal domain-like | 76 | 406 | IPR025659 | - | |
Cmu08g0647 | 406 | PRINTS | Tubby superfamily signature | 208 | 235 | IPR000007 | - | |
Cmu08g0647 | 406 | PRINTS | Tubby superfamily signature | 321 | 337 | IPR000007 | - | |
Cmu08g0647 | 406 | PRINTS | Tubby superfamily signature | 363 | 382 | IPR000007 | - | |
Cmu08g0647 | 406 | PRINTS | Tubby superfamily signature | 384 | 406 | IPR000007 | - | |
Cmu08g0647 | 406 | PRINTS | Tubby superfamily signature | 303 | 320 | IPR000007 | - | |
Cmu08g0647 | 406 | PRINTS | Tubby superfamily signature | 143 | 159 | IPR000007 | - | |
Cmu08g0647 | 406 | PRINTS | Tubby superfamily signature | 159 | 183 | IPR000007 | - | |
Cmu08g0647 | 406 | ProSitePatterns | Tub family signature 2. | 391 | 406 | IPR018066 | - | |
Cmu08g0647 | 406 | ProSitePatterns | Tub family signature 1. | 321 | 334 | IPR018066 | - | |
Cmu08g0647 | 406 | CDD | F-box_AtTLP-like | 27 | 71 | - | - | |
Cmu08g0647 | 406 | Gene3D | - | 20 | 77 | - | - | |
Cmu08g0647 | 406 | PANTHER | TUBBY-RELATED | 23 | 405 | - | - | |
Cmu08g0647 | 406 | MobiDBLite | consensus disorder prediction | 343 | 362 | - | - | |
Cmu08g0647 | 406 | Pfam | F-box-like | 27 | 70 | IPR001810 | GO:0005515(InterPro) | |
Cmu08g0647 | 406 | FunFam | Tubby-like F-box protein | 84 | 406 | - | - | |
Cmu08g0647 | 406 | Pfam | Tub family | 88 | 401 | IPR000007 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu05g1935 | Cmu-Chr5:29236522 | Cmu08g0647 | Cmu-Chr8:18687510 | 3.60E-117 | dispersed | |
Cmu07g1018 | Cmu-Chr7:24918032 | Cmu08g0647 | Cmu-Chr8:18687510 | 2.00E-98 | dispersed | |
Cmu08g0328 | Cmu-Chr8:8854832 | Cmu08g0647 | Cmu-Chr8:18687510 | 2.00E-182 | dispersed | |
Cmu08g0647 | Cmu-Chr8:18687510 | Cmu09g0329 | Cmu-Chr9:3150997 | 2.20E-10 | dispersed | |
Cmu08g0647 | Cmu-Chr8:18687510 | Cmu05g0635 | Cmu-Chr5:5459149 | 1.70E-119 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6646 | PF01167 | Tub | 8.80E-116 | CL0395 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu08g0647 | K19600 | - | csv:101203074 | 774.622 |