Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0703 ATGGAATTCCATCCGGAAAATGGCAACCATGGATCCGTGAAGGAGACCTCTTTGTGTGGCGACGTGGCGGTGTATTGGAGCAGTGCAGCGAAGGGGCTCGAGCAGAGTCATGTGGAGGAGTTTAAGCGTATGGTCATGGAATTTCGTCGCCCTATTGTGCGACTTGGAGGCGAGAGCCTCACGATAGCGCAAGTTGCTGCTATTGCTACCCGTGCCTTTGATGTTGCAGTGGAGCTCTCTGAGGAGGCTCGCCCTGCCGTGGAGGCAAGTAGTAGGTGGGTTGTTAAAAGTATGACTAATGGAACCGATAGTTATGGTGTTACAACTGGTTTTGGTTCTACGTCGCATCGGAGGACTGACCAAGGAGAAGCCCTTCAAAAAGAGCTCATTAGATTCTTAAATGCTGGAATTTTTGGAAACGATCCGAATTCTTGCCATACATTGCCACAACAAGCAACCAGAGCTGCCATGGTGGTGAGAATCAACACACTTTTGCAAGGCTATTCTGGCATTAGGTTTGAAATTTTGGAAGCCATAACCAAATTACTCAACCACAACATAACTCCATGTCTCCCTCTTAGAGGTACCATTACAGCTTCTGGTGACCTAGTTCCTCTCTCATATATTGCTGGGCTTTTGACTGGTCGACCTAATTCTAAGGCCATTGGGCCTAACGGTGACTCTCTTAACCCAATTGAGGCATTTCATCTTGCTGGGATTAGTGGTGGTTTCTTCAACTTGCAACCTAAAGAAGGTCTTGCTCTTGTCAATGGCACTGCAGTTGGGTCAGGCTTGGCTTCCATGGTTCTATTTGAAGCTAACTTTCTTGCTATCCTTTCTGCGATCTTGTCAGCAATTTTTGCTGAAGTTATGCAAGGAAAACCTGAGTTTACAGATCATTTGACTCATAAGTTAAAACACCATCCTGGTCAGATTGAAGCAGCTGCAATTATGGAGCATATATTAGATGGAAGTTCTTATGTCAAAAGTGCTAAAAAATTGCACGAAACTGACTCACTTCAAAAGCCTAAACAAGATCGATATGCTCTTAGAACTTCACCTCAGTGGCTCGGTCCTCAAATTGAAGTCATTAGATACTCCACCAAAATGATTGAACGTGAGATTAACTCAGTGAACGATAACCCATTGATTGATGTGTCGAGAAACAAGGCTTTGCATGGAGGAAATTTCCAAGGCACTCCCATTGGTGTGTCCATGGATAATACTCGTTTAGCCATTGCTTCTATTGGTAAACTCATGTTTGCACAATTCTCAGAACTTGTTAATGACTTCTACAATAATGGGTTGCCTTCAAATCTCTCTGCTAGTAGAAATCCAAGTTTGGATTACGGGTTTAAAGGTGCTGAGATTGCAATGGCTTCATATTGCTCTGAGCTTCAATACTTGGCAAATCCAGTAACCAGCCATGTCCAAAGCGCCGAACAACATAACCAAGACGTAAACTCATTGGGGTTGATATCATCAAGAAAGACAGCGGAAGCTGTTGAGATTTTAAAGCTTATGTCCACTACTTATTTGGTCGCATTATGCCAAGCTATTGATTTAAGACACATAGAGGAGATTTTGAAGAAAACAGTAAAGAATACCGTTAGCCAAGTGGCAAAAAAGATTCTGGTGTTGCACTTTAATGGCAATCTCCATCCAATTAGGCATAGTGAAAAGGATTTGCTTCAAGTCGTAGACAGAGAACACGTTTTTGCCTATATTGATGATCCTTGCAGTGCTTCATATCCATTGATGCAAAGGCTAAGACAAGTGTTGGTGGATCATGCCCTAAAAAATGGTGAAAAAGAAAACAACCCAAGTGCTTCAATCTTCCTAAAGATCACAGCTTTTGAAGATGAATTAAAAGCACTTTTGCCTAAAGAAGTGGAAAATGCAAGAATGGAAGTGGAAAAAGGGAGCCCTACCATTGAAAACCAAATTAAAGAATGCAGATCTTATCCACTGTACAAGTTCATTAGAGAAACGTTGGGAACTCAATTGTTGACTGGCGAGAAAGATGTTTCGCCAGGAGAAGAATTCGATAAGGTTTTTTCAGCTATTTCTGATGGAAAATTGATAGATCCAATGCTTGAATGTTTGAAGGATTGGAATGGTGCTCCGCTTCCTCTTAGTTAG 2142 42.2 MEFHPENGNHGSVKETSLCGDVAVYWSSAAKGLEQSHVEEFKRMVMEFRRPIVRLGGESLTIAQVAAIATRAFDVAVELSEEARPAVEASSRWVVKSMTNGTDSYGVTTGFGSTSHRRTDQGEALQKELIRFLNAGIFGNDPNSCHTLPQQATRAAMVVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGDSLNPIEAFHLAGISGGFFNLQPKEGLALVNGTAVGSGLASMVLFEANFLAILSAILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKSAKKLHETDSLQKPKQDRYALRTSPQWLGPQIEVIRYSTKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAVEILKLMSTTYLVALCQAIDLRHIEEILKKTVKNTVSQVAKKILVLHFNGNLHPIRHSEKDLLQVVDREHVFAYIDDPCSASYPLMQRLRQVLVDHALKNGEKENNPSASIFLKITAFEDELKALLPKEVENARMEVEKGSPTIENQIKECRSYPLYKFIRETLGTQLLTGEKDVSPGEEFDKVFSAISDGKLIDPMLECLKDWNGAPLPLS 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19363888 19368134 + CmPI595203_08g007030.1 Cmu08g0703 422189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0703 713 PANTHER HISTIDINE AMMONIA-LYASE 20 712 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cmu08g0703 713 FunFam Phenylalanine ammonia-lyase 13 259 - -
Cmu08g0703 713 CDD PAL-HAL 58 523 IPR001106 -
Cmu08g0703 713 FunFam Phenylalanine ammonia-lyase 260 542 - -
Cmu08g0703 713 Gene3D - 526 647 IPR023144 -
Cmu08g0703 713 SUPERFAMILY L-aspartase-like 24 712 IPR008948 GO:0003824(InterPro)
Cmu08g0703 713 Pfam Aromatic amino acid lyase 60 536 IPR001106 -
Cmu08g0703 713 Gene3D Fumarase/aspartase (Central domain) 260 708 - -
Cmu08g0703 713 FunFam Phenylalanine ammonia-lyase 526 647 - -
Cmu08g0703 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841(InterPro)
Cmu08g0703 713 Gene3D - 15 259 IPR024083 -
Cmu08g0703 713 NCBIfam phenylalanine ammonia-lyase 25 703 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g1165 Cmu-Chr7:26949215 Cmu08g0703 Cmu-Chr8:19363888 0.00E+00 dispersed
Cmu07g1166 Cmu-Chr7:26953068 Cmu08g0703 Cmu-Chr8:19363888 0.00E+00 dispersed
Cmu02g2120 Cmu-Chr2:34875763 Cmu08g0703 Cmu-Chr8:19363888 0.00E+00 wgd
Cmu04g0943 Cmu-Chr4:23909135 Cmu08g0703 Cmu-Chr8:19363888 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0703 K10775 - csv:101206890 1280.0