Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0727 ACACAGTTGTCTTGCTCTCCATCCCTTCTTGATGCTCAAAACCCTAACAAGAAAATTCATTTATACTCCAAACAAAGCCTCGCAGACATGTCTGCTACTACTGGCATTCTCTTCTTCATCTGGTTGTTGAGCTCCACTCTGCCTTCTCTTACCATGGCAACTTTCAACTTCAATCTCACTCTCCCACATCTTCTTCCCGATCCTGAGACTGTTGCTTATCAAGTTCAGAGGAGTGTGAACGATTCCATTTCCAGAAGACAAATGCTGTCCTTTCATTCAAAAGGACAATCCAATTCCTGTCAAACCGGAAACCCTATCGACGATTGTTGGCGCTGCGACTCCAACTGGCAAGCCAATCGCCAAAAACTCGCCGATTGCGGCATTGGATTCGGCCGAGACGCCATGGGAGGGAAAGGAGGTCAGATCTACGTAGTTACAGATTCCTCCGATTCCGACCCTGTAAACCCTCGCCCTGGAACTCTCCGCTACGCCGTAGTTCAAGATGAACCTCTCTGGATTGTCTTTGCTGCAGATATGACAATCAAACTCAAATACGAACTCATGATGAACAGTTACAAAACCCTAGATGGCCGCGGTGCCAATGTCCATATCACCGGCGGCGGCTGCGTCACACTCCAATACATCTCGAATATAATCATCCACAATATCAACATCCACCACTGTATTCCTACCGGCCACACCAACATCCGCTCGTCTCCAACGCACGTCGGATACAGAGGAAAATCCGACGGCGACGGAATCTCGATCTTTAGCTCGCGCAACATCTGGATCGATCATTGCTCGCTCTCGTACTGTACCGATGGCCTAATCGACGCCATTATGGGATCGACCGGAATCACGATCTCGAACAACTACTTCTCGCACCACGACGAGGTGATGCTGCTAGGGCACGACGACGGCTTCACGCCGGACTCGGGGATGCAGGTGACGATTGCGTTTAATTTGTTCGGCGAGAAGCTTGTTCAGAGGATGCCCCGGTGCCGACGGGGATACATTCATGTTGTTAACAACGACTTCCGATCGTGGGAGATGTACGCCATCGGCGGCAGCGGTAATCCGACGATCAACAGCCAAGGAAATCGGTACATTGCTCCGGGAAATCCCAATGCGAAGGAGGTGACGAAGCGCGTGGACACAAACGCGGGGGATTGGTCGGAGTGGAACTGGAGGACGGAGGGGGACATAATGGTAAATGGAGCATTTTTTGTGCCATCCGGCGAAGGACTGAGCAATATGTACGTTAAAGCTTCCAGTTTGCCGCCCAAATCCGCCGCTCTTGTCGACCAGCTCACTCTCAACGCCGGCGTCTTCGGCGGCTCCAGGGAGAGTAGACAGAGCAACACATATCCCGGAGACCAAAGCTCCTCCAGCTCGGGATCCAGTGGCAGCAGCGATGGCGGTGGTGACTACTTTGGGATGATATTCGGTGGGGGCGGGATTAACAGTGCACCACCGCCATCTCTTTCAGTTGTTAACATGATCATTCTAACTCTGTTTACCGTTTTAGTTCTGTACACAAACTCGAACTACGATGCTTTATTATCATCAACATTGTCATTGTAG 1584 50.88 TQLSCSPSLLDAQNPNKKIHLYSKQSLADMSATTGILFFIWLLSSTLPSLTMATFNFNLTLPHLLPDPETVAYQVQRSVNDSISRRQMLSFHSKGQSNSCQTGNPIDDCWRCDSNWQANRQKLADCGIGFGRDAMGGKGGQIYVVTDSSDSDPVNPRPGTLRYAVVQDEPLWIVFAADMTIKLKYELMMNSYKTLDGRGANVHITGGGCVTLQYISNIIIHNINIHHCIPTGHTNIRSSPTHVGYRGKSDGDGISIFSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDGFTPDSGMQVTIAFNLFGEKLVQRMPRCRRGYIHVVNNDFRSWEMYAIGGSGNPTINSQGNRYIAPGNPNAKEVTKRVDTNAGDWSEWNWRTEGDIMVNGAFFVPSGEGLSNMYVKASSLPPKSAALVDQLTLNAGVFGGSRESRQSNTYPGDQSSSSSGSSGSSDGGGDYFGMIFGGGGINSAPPPSLSVVNMIILTLFTVLVLYTNSNYDALLSSTLSL 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19623118 19629152 - CmPI595203_08g007270.1 Cmu08g0727 422213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0727 527 PANTHER PECTATE LYASE 18-RELATED 61 445 IPR045032 GO:0030570(InterPro)
Cmu08g0727 527 SUPERFAMILY Pectin lyase-like 104 443 IPR011050 -
Cmu08g0727 527 Pfam Pectate lyase 186 367 IPR002022 -
Cmu08g0727 527 Gene3D - 103 445 IPR012334 -
Cmu08g0727 527 SMART amb_all 178 375 IPR002022 -
Cmu08g0727 527 PRINTS Pollen allergen Amb family signature 250 271 IPR018082 -
Cmu08g0727 527 PRINTS Pollen allergen Amb family signature 394 418 IPR018082 -
Cmu08g0727 527 PRINTS Pollen allergen Amb family signature 330 349 IPR018082 -
Cmu08g0727 527 PRINTS Pollen allergen Amb family signature 186 202 IPR018082 -
Cmu08g0727 527 PRINTS Pollen allergen Amb family signature 126 143 IPR018082 -
Cmu08g0727 527 PRINTS Pollen allergen Amb family signature 352 371 IPR018082 -
Cmu08g0727 527 PRINTS Pollen allergen Amb family signature 423 446 IPR018082 -
Cmu08g0727 527 PRINTS Pollen allergen Amb family signature 150 175 IPR018082 -
Cmu08g0727 527 MobiDBLite consensus disorder prediction 445 472 - -
Cmu08g0727 527 FunFam Pectate lyase 103 445 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0891 Cmu-Chr4:23433616 Cmu08g0727 Cmu-Chr8:19623118 3.30E-40 dispersed
Cmu08g0727 Cmu-Chr8:19623118 Cmu09g1873 Cmu-Chr9:34862403 5.80E-144 dispersed
Cmu04g0973 Cmu-Chr4:24179898 Cmu08g0727 Cmu-Chr8:19623118 2.50E-178 wgd
Cmu05g2187 Cmu-Chr5:31318746 Cmu08g0727 Cmu-Chr8:19623118 2.10E-192 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0727 K01728 - csv:101207535 915.605