Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0801 ATGGGGATTCAAACTATGGGGTCTCAGGCCGGAGGTGATCCAAATGGCAAACAATCACAATTCCAGCCATTGGTTCGTCAAAATTCACTGTATAGTCTCACACTGGATGAGGTTCAAAATCAGTTGGGCGATCTAGGAAAGCCTTTAATCAGCATGAACCTTGATGAGCTTCTTAAAAATGTGTGGACTGCTGAGGCCAACCAAACTGTTGGTAAAGACAATGAGGACAATAATGTCTTGGCCAATCAAACATCCCTACAACGTCAGGCTAGTCTTTCATTGAATGGTGCTCTGAGTAAAAAGACTGTCGATGAGGTGTGGAGAGACATTCAACAAAGCAAAGACAGTGAGGAGAAGAAGTCTCGTGAACGGCAACCTACGTTGGGAGAGATGACATTGGAAGATTTTCTGGTGAAAGCAGGGGTGGTTGCTGAGACATCGTCGAATAAAAAAGGTGCGGGTCCTGTTGTTGAAATTGACGCAAATATCACACCCCAGTTTCAACAAACGCAGTGGATGCCGTACCCTCAACCTCAGTATCAGTCTCAACAAGCAGCAATGATGGGGGTTTACATGTCAGGCCAGCCTATTCCCCAGCCACTGCATGTGGGAGGTGGTGCTGTGATGGATGTTCCATATGTAGACAACCAGTTGGCATTGCCAACTCCTTTGATGGGAGCTTTATCTGATACACAGACATCTGGAAGAAAAAGGGGAGCGCCTGAAGACATGATTGAGAAAACTGTCGAGCGTAGACAGAAGAGGATGATAAAGAATCGGGAATCTGCCGCTCGTTCACGAGCAAGGAAGCAGGCATATACCAATGAACTGGAGAATAAAGTTTCACGTTTGGAAGAGGAGAATGAAAGGCTCAGGAAACGGAAGGAGCTGGAAAAGATGCTACCGTTGGCTCCCTCTCCTGAGCCGAAGTATCAGCTTCGAAGAACTTCGTCAGCGCCGTTCTAA 966 46.69 MGIQTMGSQAGGDPNGKQSQFQPLVRQNSLYSLTLDEVQNQLGDLGKPLISMNLDELLKNVWTAEANQTVGKDNEDNNVLANQTSLQRQASLSLNGALSKKTVDEVWRDIQQSKDSEEKKSRERQPTLGEMTLEDFLVKAGVVAETSSNKKGAGPVVEIDANITPQFQQTQWMPYPQPQYQSQQAAMMGVYMSGQPIPQPLHVGGGAVMDVPYVDNQLALPTPLMGALSDTQTSGRKRGAPEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKRKELEKMLPLAPSPEPKYQLRRTSSAPF 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20289566 20293817 + CmPI595203_08g008010.1 Cmu08g0801 422287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0801 321 CDD bZIP_plant_BZIP46 251 305 - -
Cmu08g0801 321 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 26 319 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Cmu08g0801 321 Pfam bZIP transcription factor 251 298 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0801 321 MobiDBLite consensus disorder prediction 252 321 - -
Cmu08g0801 321 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 249 301 - -
Cmu08g0801 321 Coils Coil 267 301 - -
Cmu08g0801 321 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 254 269 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0801 321 SUPERFAMILY Leucine zipper domain 251 296 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0801 321 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 249 294 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0801 321 Gene3D - 249 302 - -
Cmu08g0801 321 MobiDBLite consensus disorder prediction 1 23 - -
Cmu08g0801 321 SMART brlzneu 247 319 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0801 321 MobiDBLite consensus disorder prediction 252 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g2031 Cmu-Chr3:28661977 Cmu08g0801 Cmu-Chr8:20289566 1.60E-54 dispersed
Cmu08g0801 Cmu-Chr8:20289566 Cmu10g2628 Cmu-Chr10:33036518 4.50E-30 dispersed
Cmu08g0801 Cmu-Chr8:20289566 Cmu08g1536 Cmu-Chr8:27206817 4.80E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6659 PF00170 bZIP_1 3.40E-13 CL0018 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0801 K14432 - csv:101213915 580.482