Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0805 ATGATGAACACCATGGGAATCTTTGAAGATATTGGCTTTTGCCGGAATCTTGAATATTTTTCGGCTCCTCCTGGGGAACAAGAGACAGCTCAGGAGCATGAAGCTGAGGCTGCTTTGGAGGAAGATTATAGTGATGAAGAGCTGGATGTTGATGAGCTTGAGAGAAGGATGTGGCGCGACCGTATGCTTTTGAGGCGACTCAAAGAACAAAGCAAAGAGAAGGAAGGCACTGACAATTCAAAGCAGCGCCAATCCCAGGAGCAGGCCCGAAGGAAGAAGATGTCTCGGGCTCAAGATGGGATCCTGAAGTATATGTTGAAAATGATGGAGGTCTGTAAAGCTCAAGGATTCGTTTATGGGATTATTCCTGAGAAAGGAAAGCCAGTTAGTGGAGCCTCTGATAATCTTCGTGCCTGGTGGAAAGAGAAAGTCAGATTCGACAGAAACGGCCCTGCAGCAATTGCCAAATATCAGGCTGATCATGCGATTCCTGGGAACAATGATGACTGCAATACAGTGGCATCCACTCCTCACACTTTACAAGAGCTCCAAGACACAACCCTTGGATCACTTTTGTCGGCTCTGATGCAGCACTGTGATCCACCCCAAAGGCGTTTTCCGTTGGAGAAGGGAGTTTCCCCGCCGTGGTGGCCCACCGGAAACGAGGAATGGTGGCCTGAACTAGGACTACCTAAGGACCAGGGGCCGCCCCCTTATAAGAAGCCCCATGATCTGAAGAAGGCTTGGAAAGTTAGTGTTCTCACTGCTGTGATTAAGCATATGTCACCCGATATTGCCAAGATTCGCAAGCTTGTTCGTCAGTCTAAGTGTTTGCAAGACAAGATGACTGCAAAGGAGAGTGCTACATGGTTGGCCATTGTAAACCAGGAAGAAACTTTGGCTAGGAAATTGTTTCCTGATAAATGCCCACCTGTGTCGATTTGTGGGAGCGGATCTCTTTTGATCAGTGACACAAGTGATTACGATGTCGAAGGAGTTGAAGATGAACCAAATGTTGAAGCAGAGGAAAGCAAACCGCATGATCTCAATTTCTTTAATATGGGAGCTCCTGGATCTAGAGAGAGACTCATGATGGCACCTGTGGGAGCACAGATTAAGGAAGAATTCATGGAGAACAATTCAGACTTCAATCAAAAGAGGAAGCAGATGACAGATGAGTCCAATACAATAATGAATCCGAAAATATATACTTGCGAGTATTCTCAATGCCCTTATAACAGTCAGCGCCTTGGGTTTCTTGACAGGACTTCAAGAAACAACCACCAGTTGAATTGCCCAAGCTTTCAAACTAACGATGACAAATCATCATCGCCTGCTCCTCCATCCTTTAACCATCCTAAGCCACCTACTCGGCTGATGAACCCGACCCCACCCTTCAGGGTATCAGGACTTGGGCTTCCAGAAGATGGCCAGAAAATGATTTCTGACCTTCTGAGTTTCTACGATTCTAACCTTCAACAGGACAAACCTTTGAGTTCCGGTAATGTTGACATTAGAGACGATCACAACCAACAGCAACAACTGCCAAAATTCCAGCTCCAAGTAGATGATAACTTGTATTGTCAAGCAGCAATGGTGGGAAATAGTATACCAATTCAGCAGCAGCAGCAGCCTGATTTTTCTTCTACCAAACTTCCATTCGATGAGTACAAGGCAGCAGCATTCGATTCTCCATTCGGCATGTATCCCAATGATAACATCTCCGACTTCAGATTTGGTTCTCCATTTAATATGGCATCAATTGATTATGCAGCAGTAGACACAGCATTGCCCAAACAAGATACTTCCTTATGGTACCTTTGA 1824 45.56 MMNTMGIFEDIGFCRNLEYFSAPPGEQETAQEHEAEAALEEDYSDEELDVDELERRMWRDRMLLRRLKEQSKEKEGTDNSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAIPGNNDDCNTVASTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGNEEWWPELGLPKDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEETLARKLFPDKCPPVSICGSGSLLISDTSDYDVEGVEDEPNVEAEESKPHDLNFFNMGAPGSRERLMMAPVGAQIKEEFMENNSDFNQKRKQMTDESNTIMNPKIYTCEYSQCPYNSQRLGFLDRTSRNNHQLNCPSFQTNDDKSSSPAPPSFNHPKPPTRLMNPTPPFRVSGLGLPEDGQKMISDLLSFYDSNLQQDKPLSSGNVDIRDDHNQQQQLPKFQLQVDDNLYCQAAMVGNSIPIQQQQQPDFSSTKLPFDEYKAAAFDSPFGMYPNDNISDFRFGSPFNMASIDYAAVDTALPKQDTSLWYL 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20333249 20335072 + CmPI595203_08g008050.1 Cmu08g0805 422291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0805 607 Gene3D - 83 163 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cmu08g0805 607 Coils Coil 36 70 - -
Cmu08g0805 607 MobiDBLite consensus disorder prediction 69 94 - -
Cmu08g0805 607 MobiDBLite consensus disorder prediction 24 46 - -
Cmu08g0805 607 SUPERFAMILY DNA-binding domain of EIN3-like 177 301 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cmu08g0805 607 Coils Coil 373 393 - -
Cmu08g0805 607 FunFam Ethylene insensitive 3-like 1 83 161 - -
Cmu08g0805 607 MobiDBLite consensus disorder prediction 428 447 - -
Cmu08g0805 607 MobiDBLite consensus disorder prediction 448 462 - -
Cmu08g0805 607 FunFam Ethylene insensitive 3-like 1 171 308 - -
Cmu08g0805 607 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 7 605 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
Cmu08g0805 607 Gene3D - 175 308 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cmu08g0805 607 Pfam Ethylene insensitive 3, DNA-binding domain 51 298 IPR047091 GO:0003700(InterPro)
Cmu08g0805 607 MobiDBLite consensus disorder prediction 428 463 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1950 Cmu-Chr3:27152932 Cmu08g0805 Cmu-Chr8:20333249 2.60E-105 dispersed
Cmu03g2014 Cmu-Chr3:28485900 Cmu08g0805 Cmu-Chr8:20333249 1.80E-197 dispersed
Cmu07g0957 Cmu-Chr7:24151536 Cmu08g0805 Cmu-Chr8:20333249 8.50E-83 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6660 PF04873 EIN3 3.50E-132 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0805 K14514 - csv:101214396 1112.44