Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0805 ATGATGAACACCATGGGAATCTTTGAAGATATTGGCTTTTGCCGGAATCTTGAATATTTTTCGGCTCCTCCTGGGGAACAAGAGACAGCTCAGGAGCATGAAGCTGAGGCTGCTTTGGAGGAAGATTATAGTGATGAAGAGCTGGATGTTGATGAGCTTGAGAGAAGGATGTGGCGCGACCGTATGCTTTTGAGGCGACTCAAAGAACAAAGCAAAGAGAAGGAAGGCACTGACAATTCAAAGCAGCGCCAATCCCAGGAGCAGGCCCGAAGGAAGAAGATGTCTCGGGCTCAAGATGGGATCCTGAAGTATATGTTGAAAATGATGGAGGTCTGTAAAGCTCAAGGATTCGTTTATGGGATTATTCCTGAGAAAGGAAAGCCAGTTAGTGGAGCCTCTGATAATCTTCGTGCCTGGTGGAAAGAGAAAGTCAGATTCGACAGAAACGGCCCTGCAGCAATTGCCAAATATCAGGCTGATCATGCGATTCCTGGGAACAATGATGACTGCAATACAGTGGCATCCACTCCTCACACTTTACAAGAGCTCCAAGACACAACCCTTGGATCACTTTTGTCGGCTCTGATGCAGCACTGTGATCCACCCCAAAGGCGTTTTCCGTTGGAGAAGGGAGTTTCCCCGCCGTGGTGGCCCACCGGAAACGAGGAATGGTGGCCTGAACTAGGACTACCTAAGGACCAGGGGCCGCCCCCTTATAAGAAGCCCCATGATCTGAAGAAGGCTTGGAAAGTTAGTGTTCTCACTGCTGTGATTAAGCATATGTCACCCGATATTGCCAAGATTCGCAAGCTTGTTCGTCAGTCTAAGTGTTTGCAAGACAAGATGACTGCAAAGGAGAGTGCTACATGGTTGGCCATTGTAAACCAGGAAGAAACTTTGGCTAGGAAATTGTTTCCTGATAAATGCCCACCTGTGTCGATTTGTGGGAGCGGATCTCTTTTGATCAGTGACACAAGTGATTACGATGTCGAAGGAGTTGAAGATGAACCAAATGTTGAAGCAGAGGAAAGCAAACCGCATGATCTCAATTTCTTTAATATGGGAGCTCCTGGATCTAGAGAGAGACTCATGATGGCACCTGTGGGAGCACAGATTAAGGAAGAATTCATGGAGAACAATTCAGACTTCAATCAAAAGAGGAAGCAGATGACAGATGAGTCCAATACAATAATGAATCCGAAAATATATACTTGCGAGTATTCTCAATGCCCTTATAACAGTCAGCGCCTTGGGTTTCTTGACAGGACTTCAAGAAACAACCACCAGTTGAATTGCCCAAGCTTTCAAACTAACGATGACAAATCATCATCGCCTGCTCCTCCATCCTTTAACCATCCTAAGCCACCTACTCGGCTGATGAACCCGACCCCACCCTTCAGGGTATCAGGACTTGGGCTTCCAGAAGATGGCCAGAAAATGATTTCTGACCTTCTGAGTTTCTACGATTCTAACCTTCAACAGGACAAACCTTTGAGTTCCGGTAATGTTGACATTAGAGACGATCACAACCAACAGCAACAACTGCCAAAATTCCAGCTCCAAGTAGATGATAACTTGTATTGTCAAGCAGCAATGGTGGGAAATAGTATACCAATTCAGCAGCAGCAGCAGCCTGATTTTTCTTCTACCAAACTTCCATTCGATGAGTACAAGGCAGCAGCATTCGATTCTCCATTCGGCATGTATCCCAATGATAACATCTCCGACTTCAGATTTGGTTCTCCATTTAATATGGCATCAATTGATTATGCAGCAGTAGACACAGCATTGCCCAAACAAGATACTTCCTTATGGTACCTTTGA 1824 45.56 MMNTMGIFEDIGFCRNLEYFSAPPGEQETAQEHEAEAALEEDYSDEELDVDELERRMWRDRMLLRRLKEQSKEKEGTDNSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAIPGNNDDCNTVASTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGNEEWWPELGLPKDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEETLARKLFPDKCPPVSICGSGSLLISDTSDYDVEGVEDEPNVEAEESKPHDLNFFNMGAPGSRERLMMAPVGAQIKEEFMENNSDFNQKRKQMTDESNTIMNPKIYTCEYSQCPYNSQRLGFLDRTSRNNHQLNCPSFQTNDDKSSSPAPPSFNHPKPPTRLMNPTPPFRVSGLGLPEDGQKMISDLLSFYDSNLQQDKPLSSGNVDIRDDHNQQQQLPKFQLQVDDNLYCQAAMVGNSIPIQQQQQPDFSSTKLPFDEYKAAAFDSPFGMYPNDNISDFRFGSPFNMASIDYAAVDTALPKQDTSLWYL 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20333249 20335072 + CmPI595203_08g008050.1 Cmu08g0805 422291

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0805 607 Gene3D - 83 163 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cmu08g0805 607 Coils Coil 36 70 - -
Cmu08g0805 607 MobiDBLite consensus disorder prediction 69 94 - -
Cmu08g0805 607 MobiDBLite consensus disorder prediction 24 46 - -
Cmu08g0805 607 SUPERFAMILY DNA-binding domain of EIN3-like 177 301 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cmu08g0805 607 Coils Coil 373 393 - -
Cmu08g0805 607 FunFam Ethylene insensitive 3-like 1 83 161 - -
Cmu08g0805 607 MobiDBLite consensus disorder prediction 428 447 - -
Cmu08g0805 607 MobiDBLite consensus disorder prediction 448 462 - -
Cmu08g0805 607 FunFam Ethylene insensitive 3-like 1 171 308 - -
Cmu08g0805 607 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 7 605 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
Cmu08g0805 607 Gene3D - 175 308 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cmu08g0805 607 Pfam Ethylene insensitive 3, DNA-binding domain 51 298 IPR047091 GO:0003700(InterPro)
Cmu08g0805 607 MobiDBLite consensus disorder prediction 428 463 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0805 K14514 - - csv:101214396 1112.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1950 Cmu-Chr3:27152932 Cmu08g0805 Cmu-Chr8:20333249 2.60E-105 dispersed
Cmu03g2014 Cmu-Chr3:28485900 Cmu08g0805 Cmu-Chr8:20333249 1.80E-197 dispersed
Cmu07g0957 Cmu-Chr7:24151536 Cmu08g0805 Cmu-Chr8:20333249 8.50E-83 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu03g2014 . 2 626 EIL Transcription Factor Family AT2G27050 58.2 1.2e-190 663.3
Cmu08g0805 . 8 495 EIL Transcription Factor Family AT2G27050 62.8 1.4e-167 586.6
Cmu03g1950 . 15 310 EIL Transcription Factor Family AT2G27050 61.8 7.4e-100 361.7
Cmu03g1950 . 2 562 EIL Transcription Factor Family AT1G73730 55.7 1.1e-153 540.4
Cmu03g2014 . 36 334 EIL Transcription Factor Family AT1G73730 62.5 7.3e-105 378.3
Cmu08g0805 . 40 335 EIL Transcription Factor Family AT1G73730 61.3 2.3e-103 373.2
Cmu07g0957 . 25 273 EIL Transcription Factor Family AT1G73730 55.5 1.1e-73 274.6
Cmu03g2014 . 3 626 EIL Transcription Factor Family AT3G20770 62.5 1.3e-211 733.0
Cmu08g0805 . 7 493 EIL Transcription Factor Family AT3G20770 63.7 2.3e-171 599.4
Cmu03g1950 . 9 276 EIL Transcription Factor Family AT3G20770 68.5 4.1e-104 375.9
Cmu07g0957 . 19 364 EIL Transcription Factor Family AT5G65100 50.6 2.5e-97 353.2
Cmu03g1950 . 19 272 EIL Transcription Factor Family AT5G65100 50.5 2.2e-72 270.4
Cmu07g0957 . 25 364 EIL Transcription Factor Family AT5G10120 55.0 1.9e-98 356.7
Cmu03g1950 . 11 274 EIL Transcription Factor Family AT5G10120 53.9 2.3e-75 280.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6660 PF04873 EIN3 3.50E-132 No_clan Cmu TF