Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0811 ATGGAGAAGTTCCCTGTTTATTCTCTTCATTCCCTGTTGATGTTTTTATTCATTTCGAGTCTCATCGTTCCAAGTCAGCCTCTTCCGACTGAGACTCTAGCATTGCTTCGTTTCAAAGAGAATCTCAAAGACCCGACTGGTGTTCTTCATTCTTGGATTGATTCTGAATCCCCTTGTGGATTCTCTGGGATTACTTGTGATCGGGTTTCCGGGAAAGTCGTAGAAATTTCCTTGGAAAACAAGTCGCTTTCTGGTGAGATTTCTCCCTCCATTTCTGTTCTGCAAAGTCTCGCAACACTTTCATTGGCCTCAAACCACATTTCTGGGGAGCTTCCCTACCAATTGATCAACTGTAGCAATCTTAGAGTATTGAATCTCACTGATAATGAAATGGTTAAGAGGATTCCTGATCTTTCTCAGCTGAGGAAGTTGGAGGTTCTAGATCTGTCAATCAACTTCTTTTCTGGCCAATTCCCAAGCTGGGTTGGAAATTTAACTGGATTGGTTTCTCTGGGACTTGGTGAAAATGAGTATGAGGCTGGTGAGATACCGGAATCTATTGGAAATTTGAAGAACTTAACTTGGCTATATCTGGCAAATGCACAATTGAGAGGGGAAATACCAGAGTCTCTCTTTGAATTAAAGGCATTGGAGACATTGGATCTTTCAAGGAACAAGCTTTCTGGTAAACTCTCCAAGTCAATATCCAAGTTGAATAATCTGAATAAGCTTGAGCTTTTTGTTAACAAATTGACTGGAGAAATCCCACCAGAGATTTCAAATCTTACCCTTCTGCAAGAAATTGATATGTCTGCAAATAGTTTGTATGGCCAGTTGCCAGAAGAGGTTGGAAACCTGAGGAATTTGGTGGTTTTTCAATTGTATGAAAACAACTTCTCTGGAAAGCTTCCTGAAGGGTTTGGAAATATGCAAAACCTTATTGCATTTTCAATCTATAGGAACAATTTTTCTGGAGAATTTCCAGTAAACTTCGGCAGATTCGCTCCACTCAACAGCATTGACATATCAGAGAATCAATTTTCAGGGAACTTTCCCAAGTTCTTGTGTGAGAATAGGAAGTTGCAGTTCTTACTTGCTTTGGAAAATAGATTTTCAGGTGAGCTGCCACTTTCTTTAGCTGACTGCAAATCAATCCAAAGATTCAGAATCAATAATAATCAAATGTCTGGCAGGATTCCAGATGGGGTATGGGCTCTTCCTAATGCAAAAATGATTGATTTTAGTGATAATGAATTCACTGGAACTATATCCCCAAACATTGGTTTATCTACCAGCTTGAGCCAGTTGGTTTTGCCAAACAATAAGTTTTCAGGTAAACTTCCATCAGAGCTTGGCAAGTTGACAAATTTAGAGAGGCTTTACTTGAGTAACAATGAATTCAATGGAGAAATACCTTCTGAAATTGGTTTCCTCAAGCAACTTTCATCATTACACCTGGAAGTAAATTCTTTGAATGGATCAATCCCATTAGAGATTGGTAATTGTGAAAGACTTGTGGACATAAATTTTGCTCAAAACTCTCTTAGTGGTAGCATTCCATCTTCGTTTGCGTTAATCAGCTCTTTGAACTCACTGAACCTCTCAAGCAACAAACTTACAGGTATAATCCCAGAATCCTTGGAGAAGATGAAACTAAGTTCGATCGATTTTTCGGGAAATCAGCTGTTCGGGAGAGTTCCATCCAGTCTTCTGGCAATGAGTGGAGACAAAGCATTTTTGGACAACAAAGAACTCTGTGTTGATGAAAACTACAGAGAAAGGATAAATACCAGCCTGGTTACTTGTACTGGAAAGCATAGTCAGAAAGGGGTGCTTAATGATAAACTTGTATTTTTCAGTATCATAGTTTCCATCTTGGTTTGTGTATTAGCAGGGCTAGTGTTGGTAAGTTGTAATTACTTGAAGCTCGGTGAGAATGGCCTGAATACCAGTCAGGAAGGGGACCAACAAGGAATTCCAAAATGGAAAATTGCATCATTCCATCAAGTGGAAATTGATGCAGATGAAATATGCAGTTTTAAAGAAGACAATTTGATAGGGAGTGGAGGAACGGGAAAAGTTTATCGGTTGGATCTGAAGAAAAATGGTGGTACAGTGGCTGTTAAGCAGCTCTGGAAAGGAGATGCAATGAAGGTTTTGGCAGCAGAAATGGAGATTCTGGGAAAGATAAGGCATAGAAACATCTTGAAGCTCTATGCCTGCTTAATGAGAGAAGGATCTAGTTATCTAGTTTTTGAATATATGACCAATGGTAACCTGTGTGAAGCACTTCAGAGACAGATCAAAGGTGGACAGCCTGAACTGAACTGGTATCAGAGGTACAGGATTGCATTGGGAGCAGCCAGGGGAATTGCTTACTTGCACCATGATTGTTCACCACCTATAATTCATAGAGATATAAAGTCAACAAACATACTTCTTGATGAAGATTATGAACCAAAAATTGCTGATTTTGGGGTTGCAAAAGTTGCAGATCAGTTTCAAACTGCTTCTGAGCACAGCTCTCTTGCTGGCACTCATGGCTATATTGCTCCTGAGCTAGCGTATACTCTGAAAGTTTCCGAAAAAAGTGATGTGTACAGTTATGGTGTGGTGCTATTAGAATTGATTACTGGAAGGAGACCAATAGAAGATGAATATGGAGAAGGAAAAGATATAGTCTACTGGATCTCAACACACCTCGATGACCGTGATAATGTCCTCAAGCTTCTAGATATCAAAGTTGCATCTGAAGCCGTCCAAAATGACATGATTAAAGTCCTGAAGATTGCTGTACTTTGCACAACAAAGCTTCCATCACTTCGCCCTTCAATGAGAGAGGTAGTGAAGATGCTATCGGACGCTGATCCCTACTCTTCTTCAGTGTCCCTGAACAACAGTTCAAATAAAAACATTAAGGATTTTGTTTAG 2931 39.68 MEKFPVYSLHSLLMFLFISSLIVPSQPLPTETLALLRFKENLKDPTGVLHSWIDSESPCGFSGITCDRVSGKVVEISLENKSLSGEISPSISVLQSLATLSLASNHISGELPYQLINCSNLRVLNLTDNEMVKRIPDLSQLRKLEVLDLSINFFSGQFPSWVGNLTGLVSLGLGENEYEAGEIPESIGNLKNLTWLYLANAQLRGEIPESLFELKALETLDLSRNKLSGKLSKSISKLNNLNKLELFVNKLTGEIPPEISNLTLLQEIDMSANSLYGQLPEEVGNLRNLVVFQLYENNFSGKLPEGFGNMQNLIAFSIYRNNFSGEFPVNFGRFAPLNSIDISENQFSGNFPKFLCENRKLQFLLALENRFSGELPLSLADCKSIQRFRINNNQMSGRIPDGVWALPNAKMIDFSDNEFTGTISPNIGLSTSLSQLVLPNNKFSGKLPSELGKLTNLERLYLSNNEFNGEIPSEIGFLKQLSSLHLEVNSLNGSIPLEIGNCERLVDINFAQNSLSGSIPSSFALISSLNSLNLSSNKLTGIIPESLEKMKLSSIDFSGNQLFGRVPSSLLAMSGDKAFLDNKELCVDENYRERINTSLVTCTGKHSQKGVLNDKLVFFSIIVSILVCVLAGLVLVSCNYLKLGENGLNTSQEGDQQGIPKWKIASFHQVEIDADEICSFKEDNLIGSGGTGKVYRLDLKKNGGTVAVKQLWKGDAMKVLAAEMEILGKIRHRNILKLYACLMREGSSYLVFEYMTNGNLCEALQRQIKGGQPELNWYQRYRIALGAARGIAYLHHDCSPPIIHRDIKSTNILLDEDYEPKIADFGVAKVADQFQTASEHSSLAGTHGYIAPELAYTLKVSEKSDVYSYGVVLLELITGRRPIEDEYGEGKDIVYWISTHLDDRDNVLKLLDIKVASEAVQNDMIKVLKIAVLCTTKLPSLRPSMREVVKMLSDADPYSSSVSLNNSSNKNIKDFV 976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20370923 20374137 - CmPI595203_08g008110.1 Cmu08g0811 422297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0811 976 ProSiteProfiles Leucine-rich repeat profile. 120 142 IPR001611 GO:0005515(InterPro)
Cmu08g0811 976 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu08g0811 976 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 332 954 IPR051564 GO:0016020(PANTHER)
Cmu08g0811 976 SMART serkin_6 680 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g0811 976 FunFam Leucine-rich receptor-like protein kinase family protein 670 754 - -
Cmu08g0811 976 FunFam Leucine-rich repeat receptor protein kinase EMS1 207 291 - -
Cmu08g0811 976 PRINTS Leucine-rich repeat signature 217 230 - -
Cmu08g0811 976 PRINTS Leucine-rich repeat signature 526 539 - -
Cmu08g0811 976 ProSitePatterns Protein kinases ATP-binding region signature. 686 709 IPR017441 GO:0005524(InterPro)
Cmu08g0811 976 Gene3D Ribonuclease Inhibitor 180 238 IPR032675 -
Cmu08g0811 976 Gene3D Ribonuclease Inhibitor 239 312 IPR032675 -
Cmu08g0811 976 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Cmu08g0811 976 SUPERFAMILY Protein kinase-like (PK-like) 677 952 IPR011009 -
Cmu08g0811 976 ProSiteProfiles Leucine-rich repeat profile. 528 549 IPR001611 GO:0005515(InterPro)
Cmu08g0811 976 SUPERFAMILY RNI-like 249 569 - -
Cmu08g0811 976 Gene3D Transferase(Phosphotransferase) domain 1 755 973 - -
Cmu08g0811 976 FunFam leucine-rich repeat receptor-like protein kinase TDR 755 963 - -
Cmu08g0811 976 FunFam Receptor-like protein kinase HSL1 292 594 - -
Cmu08g0811 976 FunFam Probable inactive receptor kinase RLK902 28 181 - -
Cmu08g0811 976 ProSiteProfiles Protein kinase domain profile. 680 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g0811 976 SMART LRR_typ_2 454 478 IPR003591 -
Cmu08g0811 976 SMART LRR_typ_2 190 214 IPR003591 -
Cmu08g0811 976 SMART LRR_typ_2 262 286 IPR003591 -
Cmu08g0811 976 SMART LRR_typ_2 94 118 IPR003591 -
Cmu08g0811 976 SMART LRR_typ_2 526 549 IPR003591 -
Cmu08g0811 976 SMART LRR_typ_2 141 165 IPR003591 -
Cmu08g0811 976 Gene3D Ribonuclease Inhibitor 28 179 IPR032675 -
Cmu08g0811 976 Gene3D Ribonuclease Inhibitor 313 594 IPR032675 -
Cmu08g0811 976 Pfam Leucine Rich Repeat 143 165 IPR001611 GO:0005515(InterPro)
Cmu08g0811 976 Pfam Leucine Rich Repeat 240 262 IPR001611 GO:0005515(InterPro)
Cmu08g0811 976 Pfam Leucine Rich Repeat 288 310 IPR001611 GO:0005515(InterPro)
Cmu08g0811 976 Pfam Leucine Rich Repeat 456 478 IPR001611 GO:0005515(InterPro)
Cmu08g0811 976 Pfam Leucine Rich Repeat 528 550 IPR001611 GO:0005515(InterPro)
Cmu08g0811 976 Pfam Leucine Rich Repeat 217 238 IPR001611 GO:0005515(InterPro)
Cmu08g0811 976 SUPERFAMILY L domain-like 57 293 - -
Cmu08g0811 976 Pfam Protein kinase domain 681 950 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g0811 976 Gene3D Phosphorylase Kinase; domain 1 650 754 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0166 Cmu-Chr6:1719284 Cmu08g0811 Cmu-Chr8:20370923 2.00E-40 dispersed
Cmu08g0811 Cmu-Chr8:20370923 Cmu11g1491 Cmu-Chr11:27250712 4.30E-76 dispersed
Cmu08g0811 Cmu-Chr8:20370923 Cmu08g1136 Cmu-Chr8:23746096 1.60E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75720 PF00069 Pkinase 2.70E-48 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0811 - - - 0.0