Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0827 ATGAATAATGACAATTTTTCATGTACCCCATGGGAAATGAGTTGTGCTCTCTCAAATGTGATTCCATGGCCGTCAAGGGCATCAAGAGACGGCGGAGAACTGCTTCTTCTTCCCCCACAGTTGGTGGTGGAGATGCTCAACCACACAAGTCAATGGCAGATCATTCCACTGCCACAAAAAGAAGCTCCAGGTTTCGTGGAGTTAGCAGACATCGATGGACGGGGCGATTTGAAGCTCATTTATGGGACAAAGGGTCTTGGAATCCAACACAAAGGAAGAAGGGAAAACAAGGTTTTATTTATTTATTTAAAATTAGCTGCACATATATATGGCAAAGCTCATAATTTTGTTCTTGTTTGTGTTGTGATATGTGATGATGATCAACCCATTGACATTGAAATAAATGGAGCAGTTTATTTAGGAGCTTATGATGAAGAAGAATCAGCTGCTAGGGCATATGACTTAGCTGCACTCAAGTATTGGGGAACATCAACTTTCACTAACTTTTCGATATCTGATTATGAGGATGAGATTGAGATGATGAAAAATGTGACAAAGGAGGAATACTTGGCCTCTTTAAGAAGGAGAAGCAGTGGTTTCTCAAGAGGTGTATCAAAATATCGGGGAGTCGCCAGACACCATCACAATGGGAGGTGGGAAGCAAGAATTGGAAGAGTTTTTGGCAACAAATATTTGTACCTTGGAACTTACAGTACACAAGAGGAGGCAGCAAGGGCATACGACATAGCAGCTATAGAATACAGAGGCATAAACGCAGTGACCAACTTCGATTTGAGCACTTACATAAGATGGCTTAAACCCCAACAACACCATCCAAATCCAAAACAATCTTCTCCACCAATTTCCTCCTTCTTTCCAATTGATACACCTCCTAATAATAATACCCTACAATCTTCTAATGATAATCTTCACTTTCCTATCTTCCAACCCCTCAATAATGATGATACTAATAATAATGTCATTATTCCCACTGCCCCACAAACTTCCCCTCGCACAGCCCTTGGCCTCCTCCTCAAATCCTCCCTCTTCAAACACCTTGTGGAGAAGAACATTGTGAATAATGTCAATGAAGAGGAGTACTACTCCAATGATGAAGAAGCTAGAGGCCTACTCTCCTTTGCTCATTCTAATAATCCCTACTTGGATTTGCACTATCCATGTCAAGGAACCACCAACTTATCACTCTCCACCTCTCTCCATTACTCCACTCTACCGAGTCACAAATTTAGGACTTGTTTGAAATGA 1266 41.31 MNNDNFSCTPWEMSCALSNVIPWPSRASRDGGELLLLPPQLVVEMLNHTSQWQIIPLPQKEAPGFVELADIDGRGDLKLIYGTKGLGIQHKGRRENKVLFIYLKLAAHIYGKAHNFVLVCVVICDDDQPIDIEINGAVYLGAYDEEESAARAYDLAALKYWGTSTFTNFSISDYEDEIEMMKNVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLKPQQHHPNPKQSSPPISSFFPIDTPPNNNTLQSSNDNLHFPIFQPLNNDDTNNNVIIPTAPQTSPRTALGLLLKSSLFKHLVEKNIVNNVNEEEYYSNDEEARGLLSFAHSNNPYLDLHYPCQGTTNLSLSTSLHYSTLPSHKFRTCLK 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20574635 20588177 - CmPI595203_08g008270.1 Cmu08g0827 422313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0827 421 ProSiteProfiles AP2/ERF domain profile. 89 170 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0827 421 CDD AP2 205 266 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0827 421 MobiDBLite consensus disorder prediction 277 300 - -
Cmu08g0827 421 ProSiteProfiles AP2/ERF domain profile. 206 264 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0827 421 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 137 296 - -
Cmu08g0827 421 Pfam AP2 domain 205 256 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0827 421 SMART rav1_2 101 176 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0827 421 SMART rav1_2 206 270 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0827 421 MobiDBLite consensus disorder prediction 275 300 - -
Cmu08g0827 421 SUPERFAMILY DNA-binding domain 205 266 IPR016177 GO:0003677(InterPro)
Cmu08g0827 421 SUPERFAMILY DNA-binding domain 138 171 IPR016177 GO:0003677(InterPro)
Cmu08g0827 421 Gene3D AP2/ERF domain 93 172 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0827 421 Gene3D AP2/ERF domain 205 266 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g0827 421 FunFam AP2-like ethylene-responsive transcription factor 205 266 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0827 Cmu-Chr8:20574635 Cmu10g2244 Cmu-Chr10:28540564 1.10E-68 dispersed
Cmu05g2265 Cmu-Chr5:32048980 Cmu08g0827 Cmu-Chr8:20574635 8.80E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6663 PF00847 AP2 9.00E-12 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0827 - - - 0.0