Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0842 ATGGTTGGCTTTAGAACCTTGTTTGTGTGTTCACTGTTGTTTTTTGTGGTAGCAAATGCGGATGTGGATGAGGATGAATACTGGCGGAATCGTGCCGCCGAAGCTCAAAAAATGGCCCAAGATGCCTACAATCCTGACCCCGAACTTGTTACTGATAACTTGAACGCCGCCGTCAGTCGGGCGATGTTGGGTCGCAACAGTACGAGAAGGAGTCTGAAGAGCAAATATAAAGGACCATGTTTGGCCACGAACCCCATTGACAGATGTTGGAGATGCGATCCAAATTGGGCCACCAACCGAAAGAAGCTAGCGGAATGTCCGTTGGGGTTCGGCCACAAAACCATTGGGGGAAAGAGAGGACCCATCTATGTGGTGACGGATGCATCGGACGACGACTTGATTAATCCTAAACCTGGAACCCTGCGCTATGGCGTGATCCAAAAAGGCCCACTTTGGATCATCTTCGGGCGAAGCATGATCATCAGGCTGAGTCAAGAGCTAATGATCTCGAGCGACAAGACCATCGACGCTCGTGGCGCCAATGTCCACATTGCCTACGGCGCTGGCCTCACCATTCAATTTGTCAACAATGTGATCATCCATAACCTTCACATCCACGACATTATCTCCAAATCAGGTGGAATGATTAGAGATTCTGTGGACCATTATGGGTTTAGAACACAAAGCGATGGCGATGGCATCTCCATCTTTGGGTCTACTAATGTTTGGATCGACCATATTTCCATGTCCAATTGTCAAGATGGTCTTATCGACGCCATCATGGGTTCCACTGCAATCACCATCTCCAATTGTCATTTCACTCACCACAATGAGGTGATGTTGTTCGGAGCCAGCGATAGCTACGCAGGTGACTCGGTTATGCAAATAACGATTGCATTCAACCACTTTGGGAGGGGATTGGTTCAAAGAATGCCAAGGTGCAGATGGGGTTTCTTCCATGTTGTTAACAATGACTACACCCACTGGCTTATGTATGCAATTGGTGGTAGCCAACACCCTACCATTGTTAGCCAAGGCAATCGTTTCATTGCTCCTCCAAACCCTAATGCCAAACAGGTAACAAAGAGAGAATATGCAATGGAGGCGGAGTGGAAGAAATGGTCATGGAGATCTGAAGGAGATTTGCTGATGAATGGAGCAGTGTTTATCCCATCAGGTGACCAAACCAAAGGGAAGAAGAAGGGTTTATCAAGATACGATATGATTTCCTTCAAGCCAGGAACATACGTCAGGAGACTTGCACGCTTCTCTGGCACACTTGCATGCGCCCCACGCAAACCATGCTAG 1308 47.86 MVGFRTLFVCSLLFFVVANADVDEDEYWRNRAAEAQKMAQDAYNPDPELVTDNLNAAVSRAMLGRNSTRRSLKSKYKGPCLATNPIDRCWRCDPNWATNRKKLAECPLGFGHKTIGGKRGPIYVVTDASDDDLINPKPGTLRYGVIQKGPLWIIFGRSMIIRLSQELMISSDKTIDARGANVHIAYGAGLTIQFVNNVIIHNLHIHDIISKSGGMIRDSVDHYGFRTQSDGDGISIFGSTNVWIDHISMSNCQDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDSYAGDSVMQITIAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPNAKQVTKREYAMEAEWKKWSWRSEGDLLMNGAVFIPSGDQTKGKKKGLSRYDMISFKPGTYVRRLARFSGTLACAPRKPC 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20695783 20697338 + CmPI595203_08g008420.1 Cmu08g0842 422328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0842 435 SUPERFAMILY Pectin lyase-like 75 397 IPR011050 -
Cmu08g0842 435 Gene3D - 83 428 IPR012334 -
Cmu08g0842 435 PANTHER PECTATE LYASE 18-RELATED 18 430 IPR045032 GO:0030570(InterPro)
Cmu08g0842 435 Pfam Pectate lyase, N terminus 25 72 IPR007524 GO:0030570(InterPro)
Cmu08g0842 435 PRINTS Pollen allergen Amb family signature 230 251 IPR018082 -
Cmu08g0842 435 PRINTS Pollen allergen Amb family signature 332 351 IPR018082 -
Cmu08g0842 435 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
Cmu08g0842 435 PRINTS Pollen allergen Amb family signature 166 182 IPR018082 -
Cmu08g0842 435 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
Cmu08g0842 435 PRINTS Pollen allergen Amb family signature 374 398 IPR018082 -
Cmu08g0842 435 PRINTS Pollen allergen Amb family signature 406 429 IPR018082 -
Cmu08g0842 435 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Cmu08g0842 435 SMART amb_all 158 355 IPR002022 -
Cmu08g0842 435 Pfam Pectate lyase 168 349 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0842 Cmu-Chr8:20695783 Cmu10g2242 Cmu-Chr10:28521823 1.10E-185 dispersed
Cmu08g0842 Cmu-Chr8:20695783 Cmu05g2509 Cmu-Chr5:33950432 4.00E-191 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0842 K01728 - csv:101217922 821.231