Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0850 ATGCTACCCAATGTGGCCTTTAGTGCCCTGGAGCCTCGACCCACGCTACATGTAATACATGTTTGGAGCATCACAATGCTTGAGCGTAGCATCGTGACGCTACCTTATTTGAACGAACCGGATGGCCCACTCTGCTCCCCCACCCGGTTCGTCCTTATGGCGATCCACGCCGGACCTTTTTCTTTTTCCATCACCGTCAGGGTATTCTCGACTTTTTACCCCATTCCTTACTGCCACTTCCAAGTTCCAACTTCGAATCTACGCCTCGTTTCTCTCTCCTCAATCCCATTTCTCACTCTAAATTCCCTTCCACCATGCTTTACACTTCCCTCTCTTTCCTCCTCTGATTCACCGGCACCGCCCTTGCCCCACCGGAAAATCCTTTTGCTTCGGGTTCCTACTGTTTCTATTCTGTTTGATTCGTCTTTTCTTCTCTCTTTGTTTGTTATTGTTCTTCTCTGTCTTCTTTATGTGAGTGGGGATTCAGGTTGGAAAAACATGTCTTCCTCTAGACCTAGCCAGTCTTCTAGCAACTCTGGGCGGTCAAGGCATAGCACCAGAATTATTGCTCAAACATCTGTGGATGCGAAGCTCCAAGCTGATTTTGAGGAATCTGGGAATTCTTTCGACTACTCAAGTTCAGTGCGTGTCTCTACCGACGTTAGTGGAGATCACCAACCTAGGTCAGACAAAGTTACAACAGCTTATCTCCATCATATACAGAAAGGCAAGCTTATTCAACCATTTGGTTGCTTGTTGGCCTTAGATGACAAAACATTCAAGGTTATTGCGTATAGTGAAAATGCCCCTGAAATGTTGACCATGGTGAGTCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATAGGGACTGATATAAGGACTATTTTCACTGCACCAAGTGCTTCTGCACTGTTGAAGGCCTTGGGCTTTGGGGAGGTTACGCTTCTTAATCCTATCCTAGTGCATTGCAAGACTTCCGGAAAACCCTTCTATGCAATTGTGCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCTGTAAAGCCTTATGAAGTTCCAGTGACAGCAGCTGGAGCCCTACAATCATATAAACTTGCTGCCAAAGCAATTACTAGATTGCAGTCTTTGCCTAGTGGGTGCATGGCTAGGCTTTGTGACACAATGGTCCAAGAAGTTTTTGAACTAACAGGTTATGATAGAGTCATGGCTTATAAGTTCCATGATGATGATCACGGGGAAGTGATCTCTGAAGTCACAAAGCCTGGCCTTGAGCCATATCTTGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCACGTTTTTTGTTCATGAAAAACAAGGTCCGCATGATTGTGGATTGTCGTGCAAAACATTTAAAAGTACTCCAAGATGAGAAATTACAGTTTGATCTAACTTTATGCGGTTCAACATTAAGGGCCCCACACAGTTGCCACTTACAGTATATGGAAAACATGAACTCTATTGCCTCTTTGGTTATGGCAGTTGTGGTTAATGAAGGGGATGAAGATGGTGAGGGCCCTGCTTTGCAGCAACAAAAGAGAAAGAGATTATGGGGGTTGGTAGTATGTCATAATACAAGTCCCAGATTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAGCTCAAGTATTTGCCATTCACGTGAACAAGGAATTGGAGTTGGAAAATCAAATTATAGAAAAAAATATTCTTCGTACACAGACACTCTTGTGCGATATGCTAATGCGGGATGCTCCTTTAGGTATTGTGTCAAGGAGTCCTAACATAATGGATCTTGTCAAATCTGATGGGGCTGCCTTGTTATATAAGAACAAAATTTGGCGATTGGGAATGACACCTAGTGACTTCCAGTTGCGGGACATTGCGTCGTGGCTTTCCGAATATCATATGGATTCAACAGGGTTGAGTACTGACAGCTTGTATGATGCAGGATATCCTGGAGCTCTTGCTTTAGGTGATGAAGTGTGTGGGATGGCTGCCGTGAGGATAACTACTAATGATATGATTTTTTGGTTTCGATCTCACACTGCTTCAGAGATTCGGTGGGGTGGAGCAAAGCATGAACATGGTGAAAAGGATGATGGCAGAAAAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTAGTCAAGACAAGAAGTTTGCCTTGGAAGGACTACGAAATGGATGCAATCCACTCTTTACAACTTATCCTTAGAAATACTTTCAAAGATACAGATACAGCTGAAATAAATCGAAAATCAATTCAAATGACACTTGGTGACCTAAAAATTGAAGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTCAGGTTAATTGAGACAGCTACTGTGCCAATTTTAGCAGTTGATGTAGATGGGTCAATTAATGGGTGGAATACAAAAATTGCTGAATTGACTGGACTTCCTGTGGATAAAGCTATTGGCAAGCATTTGCTTACGTTAGTGGAAGATTCTTCTGTAGAAGTTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAATGTTCAATTTGAGATCAAGACACATGGTTCTCATATTGAGGTTGGCTCCATCAGGCTAGTTGTAAATGCTTGTGCAAGTAGGGACCTGCGTGAGAATGTTGTGGGGGTGTGTTTTGTAGCACAAGATATCACTGGTCAGAAGATGGTTATGGACAAGTTCACTCGATTAGAAGGTGATTACAAAGCTATCGTACAAAATCCCAATCCATTAATCCCTCCAATATTTGGTTCAGATGAATTTGGATGGTGCTCAGAGTGGAATCCTGCAATGACAAAATTAACTGGGTGGTTGCGTGAAGAAGTAATTGATAAGATGCTTTTGGGAGAGGTTTTTGGCGCTCACAAATCATGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATCTTGGGGTGGTTTTGAACAATGCCATGAGTGGTCAAGATCCGGAAAAGGTTTCTTTTGGCTTCTTTGCTCGGAATGGGATGTACGTGGAATGTCTTCTATGTGTGAATAAGATCTTGGATAAGGATGGGGTGGTTACAGGAGTTTTTTGCTTTTTGCAGCTCGCTAGTCATGAGTTGCAACAAGCACTAAATATCCAACGATTATGTGAGCAGACTGCATTGAAGAGATTGAGAGCATTGGGATACATAAAAAGGCAGATACAAAATCCTCTTTCTGGGATAATCTTTTCAAGAAGATTATTGGAACGGACTGAGTTGGGAATAGAACAAAAGGAAATTCTGCATACTAGCGTACACTGTCAAAAGCAGATCTCCAAGGTTCTCGAAGAGTCTGACCTTGATAAAATTATTGACGGGTTTATTGATTTGGAAATGGTCGAGTTTACATTGCATGAAGTATTGACGGTATCAATCAGTCAAGTTATGATAAAGAGCAAAGGAAAGGGTATCCAGATAGTCAATGAAACTCTAGAAGAGGCCATGTCCGAGACCTTATATGGTGATAGTTTGAGGCTTCAACAAGTCTTGGCAGACTTTCTATTGCTATCAGTTAGTTATGCGCCAGCAGGAGGCCAGCTAACAATTTCAACCAACTTGACCAAAGATCAATTAGGAAAGTCGGTTCATCTGGTGCATTTAGAGTTCAGGATAATGTATGCTGGAGGCGGTATACCTGAATCATTGCTGAATGAGATGTTTGGTAGTGAGGAGGACGCTTCGGAGGAGGGTTTTAGTCTACTCATCAGTAGAAAACTAGTGAAGCTGATGAATGGAGATGTAAGATATATGAGAGAAGCAGGTAAGTCAAGCTTCATCATAACTGTTGAGCTTGCTGCTGCACACAAGGCAAGGTTAAGGATGGTGGTAGGGCAGGTCAAGGAGGTTGTCCCTGTGGAGATTTTAATTCCTCATATTTTATAG 3933 42.49 MLPNVAFSALEPRPTLHVIHVWSITMLERSIVTLPYLNEPDGPLCSPTRFVLMAIHAGPFSFSITVRVFSTFYPIPYCHFQVPTSNLRLVSLSSIPFLTLNSLPPCFTLPSLSSSDSPAPPLPHRKILLLRVPTVSILFDSSFLLSLFVIVLLCLLYVSGDSGWKNMSSSRPSQSSSNSGRSRHSTRIIAQTSVDAKLQADFEESGNSFDYSSSVRVSTDVSGDHQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDIRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGCMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEDGEGPALQQQKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKIWRLGMTPSDFQLRDIASWLSEYHMDSTGLSTDSLYDAGYPGALALGDEVCGMAAVRITTNDMIFWFRSHTASEIRWGGAKHEHGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDTAEINRKSIQMTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDVDGSINGWNTKIAELTGLPVDKAIGKHLLTLVEDSSVEVVKKMLFLALQGQEEQNVQFEIKTHGSHIEVGSIRLVVNACASRDLRENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMTKLTGWLREEVIDKMLLGEVFGAHKSCCRLKNQEAFVNLGVVLNNAMSGQDPEKVSFGFFARNGMYVECLLCVNKILDKDGVVTGVFCFLQLASHELQQALNIQRLCEQTALKRLRALGYIKRQIQNPLSGIIFSRRLLERTELGIEQKEILHTSVHCQKQISKVLEESDLDKIIDGFIDLEMVEFTLHEVLTVSISQVMIKSKGKGIQIVNETLEEAMSETLYGDSLRLQQVLADFLLLSVSYAPAGGQLTISTNLTKDQLGKSVHLVHLEFRIMYAGGGIPESLLNEMFGSEEDASEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKARLRMVVGQVKEVVPVEILIPHIL 1310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20777652 20786186 - CmPI595203_08g008500.1 Cmu08g0850 422336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0850 1310 Gene3D - 1122 1287 IPR036890 -
Cmu08g0850 1310 ProSiteProfiles Histidine kinase domain profile. 1066 1285 IPR005467 -
Cmu08g0850 1310 CDD HATPase_Phy-like 1170 1281 IPR044767 -
Cmu08g0850 1310 PANTHER OS08G0260000 PROTEIN 167 1160 - -
Cmu08g0850 1310 Gene3D PAS domain 240 487 - -
Cmu08g0850 1310 PRINTS Phytochrome signature 897 917 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0850 1310 PRINTS Phytochrome signature 399 418 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0850 1310 PRINTS Phytochrome signature 877 894 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0850 1310 PRINTS Phytochrome signature 299 321 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0850 1310 PRINTS Phytochrome signature 681 700 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0850 1310 PRINTS Phytochrome signature 714 732 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0850 1310 PRINTS Phytochrome signature 785 801 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0850 1310 PRINTS Phytochrome signature 804 819 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0850 1310 PRINTS Phytochrome signature 596 616 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0850 1310 PRINTS Phytochrome signature 484 505 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0850 1310 SUPERFAMILY PYP-like sensor domain (PAS domain) 240 352 IPR035965 -
Cmu08g0850 1310 Gene3D - 365 727 IPR029016 -
Cmu08g0850 1310 ProSitePatterns Phytochrome chromophore attachment site signature. 484 493 IPR013516 -
Cmu08g0850 1310 SUPERFAMILY PYP-like sensor domain (PAS domain) 929 1035 IPR035965 -
Cmu08g0850 1310 SUPERFAMILY GAF domain-like 364 563 - -
Cmu08g0850 1310 Gene3D PAS domain 929 1043 - -
Cmu08g0850 1310 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 384 556 IPR016132 -
Cmu08g0850 1310 ProSiteProfiles PAS repeat profile. 915 967 IPR000014 -
Cmu08g0850 1310 Pfam PAS fold 235 351 IPR013654 GO:0006355(InterPro)
Cmu08g0850 1310 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1171 1281 IPR003594 -
Cmu08g0850 1310 FunFam Phytochrome 571 702 - -
Cmu08g0850 1310 CDD PAS 793 899 IPR000014 -
Cmu08g0850 1310 Gene3D - 571 744 IPR043150 -
Cmu08g0850 1310 CDD PAS 926 1037 IPR000014 -
Cmu08g0850 1310 Pfam Phytochrome region 579 753 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0850 1310 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1117 1278 IPR036890 -
Cmu08g0850 1310 SMART HisKA_10 1059 1123 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cmu08g0850 1310 FunFam Phytochrome 778 909 - -
Cmu08g0850 1310 Gene3D PAS domain 777 914 - -
Cmu08g0850 1310 ProSiteProfiles PAS repeat profile. 782 852 IPR000014 -
Cmu08g0850 1310 Pfam GAF domain 387 565 IPR003018 GO:0005515(InterPro)
Cmu08g0850 1310 NCBIfam PAS domain S-box protein 789 905 IPR000014 -
Cmu08g0850 1310 SMART pas_2 784 850 IPR000014 -
Cmu08g0850 1310 SMART pas_2 914 983 IPR000014 -
Cmu08g0850 1310 Coils Coil 563 583 - -
Cmu08g0850 1310 SUPERFAMILY PYP-like sensor domain (PAS domain) 788 895 IPR035965 -
Cmu08g0850 1310 SMART gaf_1 384 576 IPR003018 GO:0005515(InterPro)
Cmu08g0850 1310 MobiDBLite consensus disorder prediction 165 185 - -
Cmu08g0850 1310 Pfam His Kinase A (phospho-acceptor) domain 1060 1120 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cmu08g0850 1310 Pfam PAS fold 915 1037 IPR013767 GO:0006355(InterPro)
Cmu08g0850 1310 Pfam PAS fold 785 899 IPR013767 GO:0006355(InterPro)
Cmu08g0850 1310 SMART HKATPase_4 1171 1283 IPR003594 -
Cmu08g0850 1310 SUPERFAMILY GAF domain-like 574 751 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0850 K12120 - - csv:101208491 2151.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0290 Cmu-Chr2:2626104 Cmu08g0850 Cmu-Chr8:20777652 0.00E+00 dispersed
Cmu05g0730 Cmu-Chr5:6316831 Cmu08g0850 Cmu-Chr8:20777652 0.00E+00 dispersed
Cmu08g0850 Cmu-Chr8:20777652 Cmu08g0853 Cmu-Chr8:20818450 0.00E+00 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu10g0909 . 5 1220 Histidine Kinase Gene Family AT2G17820 64.2 0.0e+00 1453.0
Cmu11g0104 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1344.7
Cmu01g0644 . 24 971 Histidine Kinase Gene Family AT2G01830 71.5 0.0e+00 1296.2
Cmu02g0274 . 290 1242 Histidine Kinase Gene Family AT2G01830 53.7 2.3e-277 952.2
Cmu06g0214 . 97 1023 Histidine Kinase Gene Family AT2G01830 53.7 5.7e-268 921.0
Cmu02g0939 . 304 1252 Histidine Kinase Gene Family AT2G01830 51.9 7.0e-266 914.1
Cmu05g1639 . 1 997 Histidine Kinase Gene Family AT5G10720 57.3 8.5e-292 1000.0
Cmu08g0850 . 167 1286 Histidine Kinase Gene Family AT1G09570 80.2 0.0e+00 1831.6
Cmu08g0853 . 12 1125 Histidine Kinase Gene Family AT1G09570 70.3 0.0e+00 1557.3
Cmu02g0290 . 18 1112 Histidine Kinase Gene Family AT1G09570 54.8 0.0e+00 1205.3
Cmu05g0730 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.4 0.0e+00 1196.4
Cmu05g0730 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.7 0.0e+00 1670.2
Cmu03g1310 . 31 1051 Histidine Kinase Gene Family AT2G18790 60.8 0.0e+00 1243.0
Cmu08g0850 . 187 1220 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1090.1
Cmu02g0290 . 26 1069 Histidine Kinase Gene Family AT2G18790 52.2 0.0e+00 1078.2
Cmu02g0290 . 12 1116 Histidine Kinase Gene Family AT5G35840 61.6 0.0e+00 1362.4
Cmu05g0730 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.9 0.0e+00 1152.9
Cmu08g0850 . 175 1280 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1117.1
Cmu05g0730 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.6 0.0e+00 1708.3
Cmu03g1310 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.0 0.0e+00 1282.7
Cmu08g0850 . 174 1281 Histidine Kinase Gene Family AT4G16250 52.9 0.0e+00 1137.9
Cmu02g0290 . 26 1115 Histidine Kinase Gene Family AT4G16250 52.5 0.0e+00 1117.4
Cmu03g1310 . 15 1113 Histidine Kinase Gene Family AT4G18130 63.2 0.0e+00 1370.5
Cmu05g0730 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.8 0.0e+00 1272.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56