Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0850 ATGCTACCCAATGTGGCCTTTAGTGCCCTGGAGCCTCGACCCACGCTACATGTAATACATGTTTGGAGCATCACAATGCTTGAGCGTAGCATCGTGACGCTACCTTATTTGAACGAACCGGATGGCCCACTCTGCTCCCCCACCCGGTTCGTCCTTATGGCGATCCACGCCGGACCTTTTTCTTTTTCCATCACCGTCAGGGTATTCTCGACTTTTTACCCCATTCCTTACTGCCACTTCCAAGTTCCAACTTCGAATCTACGCCTCGTTTCTCTCTCCTCAATCCCATTTCTCACTCTAAATTCCCTTCCACCATGCTTTACACTTCCCTCTCTTTCCTCCTCTGATTCACCGGCACCGCCCTTGCCCCACCGGAAAATCCTTTTGCTTCGGGTTCCTACTGTTTCTATTCTGTTTGATTCGTCTTTTCTTCTCTCTTTGTTTGTTATTGTTCTTCTCTGTCTTCTTTATGTGAGTGGGGATTCAGGTTGGAAAAACATGTCTTCCTCTAGACCTAGCCAGTCTTCTAGCAACTCTGGGCGGTCAAGGCATAGCACCAGAATTATTGCTCAAACATCTGTGGATGCGAAGCTCCAAGCTGATTTTGAGGAATCTGGGAATTCTTTCGACTACTCAAGTTCAGTGCGTGTCTCTACCGACGTTAGTGGAGATCACCAACCTAGGTCAGACAAAGTTACAACAGCTTATCTCCATCATATACAGAAAGGCAAGCTTATTCAACCATTTGGTTGCTTGTTGGCCTTAGATGACAAAACATTCAAGGTTATTGCGTATAGTGAAAATGCCCCTGAAATGTTGACCATGGTGAGTCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATAGGGACTGATATAAGGACTATTTTCACTGCACCAAGTGCTTCTGCACTGTTGAAGGCCTTGGGCTTTGGGGAGGTTACGCTTCTTAATCCTATCCTAGTGCATTGCAAGACTTCCGGAAAACCCTTCTATGCAATTGTGCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCTGTAAAGCCTTATGAAGTTCCAGTGACAGCAGCTGGAGCCCTACAATCATATAAACTTGCTGCCAAAGCAATTACTAGATTGCAGTCTTTGCCTAGTGGGTGCATGGCTAGGCTTTGTGACACAATGGTCCAAGAAGTTTTTGAACTAACAGGTTATGATAGAGTCATGGCTTATAAGTTCCATGATGATGATCACGGGGAAGTGATCTCTGAAGTCACAAAGCCTGGCCTTGAGCCATATCTTGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCACGTTTTTTGTTCATGAAAAACAAGGTCCGCATGATTGTGGATTGTCGTGCAAAACATTTAAAAGTACTCCAAGATGAGAAATTACAGTTTGATCTAACTTTATGCGGTTCAACATTAAGGGCCCCACACAGTTGCCACTTACAGTATATGGAAAACATGAACTCTATTGCCTCTTTGGTTATGGCAGTTGTGGTTAATGAAGGGGATGAAGATGGTGAGGGCCCTGCTTTGCAGCAACAAAAGAGAAAGAGATTATGGGGGTTGGTAGTATGTCATAATACAAGTCCCAGATTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAGCTCAAGTATTTGCCATTCACGTGAACAAGGAATTGGAGTTGGAAAATCAAATTATAGAAAAAAATATTCTTCGTACACAGACACTCTTGTGCGATATGCTAATGCGGGATGCTCCTTTAGGTATTGTGTCAAGGAGTCCTAACATAATGGATCTTGTCAAATCTGATGGGGCTGCCTTGTTATATAAGAACAAAATTTGGCGATTGGGAATGACACCTAGTGACTTCCAGTTGCGGGACATTGCGTCGTGGCTTTCCGAATATCATATGGATTCAACAGGGTTGAGTACTGACAGCTTGTATGATGCAGGATATCCTGGAGCTCTTGCTTTAGGTGATGAAGTGTGTGGGATGGCTGCCGTGAGGATAACTACTAATGATATGATTTTTTGGTTTCGATCTCACACTGCTTCAGAGATTCGGTGGGGTGGAGCAAAGCATGAACATGGTGAAAAGGATGATGGCAGAAAAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTAGTCAAGACAAGAAGTTTGCCTTGGAAGGACTACGAAATGGATGCAATCCACTCTTTACAACTTATCCTTAGAAATACTTTCAAAGATACAGATACAGCTGAAATAAATCGAAAATCAATTCAAATGACACTTGGTGACCTAAAAATTGAAGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTCAGGTTAATTGAGACAGCTACTGTGCCAATTTTAGCAGTTGATGTAGATGGGTCAATTAATGGGTGGAATACAAAAATTGCTGAATTGACTGGACTTCCTGTGGATAAAGCTATTGGCAAGCATTTGCTTACGTTAGTGGAAGATTCTTCTGTAGAAGTTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAATGTTCAATTTGAGATCAAGACACATGGTTCTCATATTGAGGTTGGCTCCATCAGGCTAGTTGTAAATGCTTGTGCAAGTAGGGACCTGCGTGAGAATGTTGTGGGGGTGTGTTTTGTAGCACAAGATATCACTGGTCAGAAGATGGTTATGGACAAGTTCACTCGATTAGAAGGTGATTACAAAGCTATCGTACAAAATCCCAATCCATTAATCCCTCCAATATTTGGTTCAGATGAATTTGGATGGTGCTCAGAGTGGAATCCTGCAATGACAAAATTAACTGGGTGGTTGCGTGAAGAAGTAATTGATAAGATGCTTTTGGGAGAGGTTTTTGGCGCTCACAAATCATGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATCTTGGGGTGGTTTTGAACAATGCCATGAGTGGTCAAGATCCGGAAAAGGTTTCTTTTGGCTTCTTTGCTCGGAATGGGATGTACGTGGAATGTCTTCTATGTGTGAATAAGATCTTGGATAAGGATGGGGTGGTTACAGGAGTTTTTTGCTTTTTGCAGCTCGCTAGTCATGAGTTGCAACAAGCACTAAATATCCAACGATTATGTGAGCAGACTGCATTGAAGAGATTGAGAGCATTGGGATACATAAAAAGGCAGATACAAAATCCTCTTTCTGGGATAATCTTTTCAAGAAGATTATTGGAACGGACTGAGTTGGGAATAGAACAAAAGGAAATTCTGCATACTAGCGTACACTGTCAAAAGCAGATCTCCAAGGTTCTCGAAGAGTCTGACCTTGATAAAATTATTGACGGGTTTATTGATTTGGAAATGGTCGAGTTTACATTGCATGAAGTATTGACGGTATCAATCAGTCAAGTTATGATAAAGAGCAAAGGAAAGGGTATCCAGATAGTCAATGAAACTCTAGAAGAGGCCATGTCCGAGACCTTATATGGTGATAGTTTGAGGCTTCAACAAGTCTTGGCAGACTTTCTATTGCTATCAGTTAGTTATGCGCCAGCAGGAGGCCAGCTAACAATTTCAACCAACTTGACCAAAGATCAATTAGGAAAGTCGGTTCATCTGGTGCATTTAGAGTTCAGGATAATGTATGCTGGAGGCGGTATACCTGAATCATTGCTGAATGAGATGTTTGGTAGTGAGGAGGACGCTTCGGAGGAGGGTTTTAGTCTACTCATCAGTAGAAAACTAGTGAAGCTGATGAATGGAGATGTAAGATATATGAGAGAAGCAGGTAAGTCAAGCTTCATCATAACTGTTGAGCTTGCTGCTGCACACAAGGCAAGGTTAAGGATGGTGGTAGGGCAGGTCAAGGAGGTTGTCCCTGTGGAGATTTTAATTCCTCATATTTTATAG 3933 42.49 MLPNVAFSALEPRPTLHVIHVWSITMLERSIVTLPYLNEPDGPLCSPTRFVLMAIHAGPFSFSITVRVFSTFYPIPYCHFQVPTSNLRLVSLSSIPFLTLNSLPPCFTLPSLSSSDSPAPPLPHRKILLLRVPTVSILFDSSFLLSLFVIVLLCLLYVSGDSGWKNMSSSRPSQSSSNSGRSRHSTRIIAQTSVDAKLQADFEESGNSFDYSSSVRVSTDVSGDHQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDIRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGCMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEDGEGPALQQQKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKIWRLGMTPSDFQLRDIASWLSEYHMDSTGLSTDSLYDAGYPGALALGDEVCGMAAVRITTNDMIFWFRSHTASEIRWGGAKHEHGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDTAEINRKSIQMTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDVDGSINGWNTKIAELTGLPVDKAIGKHLLTLVEDSSVEVVKKMLFLALQGQEEQNVQFEIKTHGSHIEVGSIRLVVNACASRDLRENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMTKLTGWLREEVIDKMLLGEVFGAHKSCCRLKNQEAFVNLGVVLNNAMSGQDPEKVSFGFFARNGMYVECLLCVNKILDKDGVVTGVFCFLQLASHELQQALNIQRLCEQTALKRLRALGYIKRQIQNPLSGIIFSRRLLERTELGIEQKEILHTSVHCQKQISKVLEESDLDKIIDGFIDLEMVEFTLHEVLTVSISQVMIKSKGKGIQIVNETLEEAMSETLYGDSLRLQQVLADFLLLSVSYAPAGGQLTISTNLTKDQLGKSVHLVHLEFRIMYAGGGIPESLLNEMFGSEEDASEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKARLRMVVGQVKEVVPVEILIPHIL 1310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20777652 20786186 - CmPI595203_08g008500.1 Cmu08g0850 422336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0850 1310 Gene3D - 1122 1287 IPR036890 -
Cmu08g0850 1310 ProSiteProfiles Histidine kinase domain profile. 1066 1285 IPR005467 -
Cmu08g0850 1310 CDD HATPase_Phy-like 1170 1281 IPR044767 -
Cmu08g0850 1310 PANTHER OS08G0260000 PROTEIN 167 1160 - -
Cmu08g0850 1310 Gene3D PAS domain 240 487 - -
Cmu08g0850 1310 PRINTS Phytochrome signature 897 917 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0850 1310 PRINTS Phytochrome signature 399 418 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0850 1310 PRINTS Phytochrome signature 877 894 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0850 1310 PRINTS Phytochrome signature 299 321 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0850 1310 PRINTS Phytochrome signature 681 700 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0850 1310 PRINTS Phytochrome signature 714 732 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0850 1310 PRINTS Phytochrome signature 785 801 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0850 1310 PRINTS Phytochrome signature 804 819 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0850 1310 PRINTS Phytochrome signature 596 616 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0850 1310 PRINTS Phytochrome signature 484 505 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0850 1310 SUPERFAMILY PYP-like sensor domain (PAS domain) 240 352 IPR035965 -
Cmu08g0850 1310 Gene3D - 365 727 IPR029016 -
Cmu08g0850 1310 ProSitePatterns Phytochrome chromophore attachment site signature. 484 493 IPR013516 -
Cmu08g0850 1310 SUPERFAMILY PYP-like sensor domain (PAS domain) 929 1035 IPR035965 -
Cmu08g0850 1310 SUPERFAMILY GAF domain-like 364 563 - -
Cmu08g0850 1310 Gene3D PAS domain 929 1043 - -
Cmu08g0850 1310 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 384 556 IPR016132 -
Cmu08g0850 1310 ProSiteProfiles PAS repeat profile. 915 967 IPR000014 -
Cmu08g0850 1310 Pfam PAS fold 235 351 IPR013654 GO:0006355(InterPro)
Cmu08g0850 1310 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1171 1281 IPR003594 -
Cmu08g0850 1310 FunFam Phytochrome 571 702 - -
Cmu08g0850 1310 CDD PAS 793 899 IPR000014 -
Cmu08g0850 1310 Gene3D - 571 744 IPR043150 -
Cmu08g0850 1310 CDD PAS 926 1037 IPR000014 -
Cmu08g0850 1310 Pfam Phytochrome region 579 753 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0850 1310 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1117 1278 IPR036890 -
Cmu08g0850 1310 SMART HisKA_10 1059 1123 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cmu08g0850 1310 FunFam Phytochrome 778 909 - -
Cmu08g0850 1310 Gene3D PAS domain 777 914 - -
Cmu08g0850 1310 ProSiteProfiles PAS repeat profile. 782 852 IPR000014 -
Cmu08g0850 1310 Pfam GAF domain 387 565 IPR003018 GO:0005515(InterPro)
Cmu08g0850 1310 NCBIfam PAS domain S-box protein 789 905 IPR000014 -
Cmu08g0850 1310 SMART pas_2 784 850 IPR000014 -
Cmu08g0850 1310 SMART pas_2 914 983 IPR000014 -
Cmu08g0850 1310 Coils Coil 563 583 - -
Cmu08g0850 1310 SUPERFAMILY PYP-like sensor domain (PAS domain) 788 895 IPR035965 -
Cmu08g0850 1310 SMART gaf_1 384 576 IPR003018 GO:0005515(InterPro)
Cmu08g0850 1310 MobiDBLite consensus disorder prediction 165 185 - -
Cmu08g0850 1310 Pfam His Kinase A (phospho-acceptor) domain 1060 1120 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cmu08g0850 1310 Pfam PAS fold 915 1037 IPR013767 GO:0006355(InterPro)
Cmu08g0850 1310 Pfam PAS fold 785 899 IPR013767 GO:0006355(InterPro)
Cmu08g0850 1310 SMART HKATPase_4 1171 1283 IPR003594 -
Cmu08g0850 1310 SUPERFAMILY GAF domain-like 574 751 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0290 Cmu-Chr2:2626104 Cmu08g0850 Cmu-Chr8:20777652 0.00E+00 dispersed
Cmu05g0730 Cmu-Chr5:6316831 Cmu08g0850 Cmu-Chr8:20777652 0.00E+00 dispersed
Cmu08g0850 Cmu-Chr8:20777652 Cmu08g0853 Cmu-Chr8:20818450 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0850 K12120 - csv:101208491 2151.71