Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0851 ATGGATCCACCTACTCTGATCAACGAAGGCTCATTTCCAAGTAACCCAAATGCCAATGCCAATATCACGCCCTTCAATCTCTCAGAGATCTGGCACTTCCCAATTAATGGCGGAACCAGTGTTGAGGAACCTGCACCTTCTCTCGCTCTCAGGATGGCTCACCTCGCTCAAAATTTGGGCCACTTTGGAGAGATTGCCATGGGGAATCCAGAGGTTTCCCCTACTGACCCAGTCACTTTGCAATTGCAGCAGAGACTAGCTCATGGTCATGGTGTTTCCAAGAAGCGCCGTGATGCAGAGCAAGATTCGCCTAAGGTCAGTTCCACCAGCAATGGCAACAATGCCAATGGCAATAGCGGCGCCGCGAATGACTCTGGTGGAAAACGCCTTAAAACAGCAGCGTGTAGAGATGATAACCACGAATCCAAAACAGAAGCGGAACCCAGATCTGGGAAGGCCGAGCAGAACTCCCAGCCACCTCCAGAACAACCCAAACAGGATTACATCCATGTGCGAGCGAGAAGGGGCCAAGCAACTGATAGCCATAGTTTGGCAGAAAGGGCTAGAAGAGAAAAGATAAGTGAGAGAATGAAAATTCTACAAGACTTGGTCCCTGGGTGTAATAAGGTCATTGGAAAAGCACTTGTACTTGATGAGATAATAAATTACATTCAATCACTTCAGCGTCAGGTTGAGTTCTTGTCAATGAAGCTTGAAGCAGTTAATTCGAGAATTGGCCCTGGGATTGAAGTGTTTCCTCCTAAAGATTATGGTCAACAAACATTCGAAACAACTGGTGTTGCATTTGGTTCACAAGCAACAAGAGAATACAGCCGTGGCTCATCACCGGAATGGCTGCATATGCAGATTGGTGGCGGTTTTGAAAGAACGAGGTAG 897 47.38 MDPPTLINEGSFPSNPNANANITPFNLSEIWHFPINGGTSVEEPAPSLALRMAHLAQNLGHFGEIAMGNPEVSPTDPVTLQLQQRLAHGHGVSKKRRDAEQDSPKVSSTSNGNNANGNSGAANDSGGKRLKTAACRDDNHESKTEAEPRSGKAEQNSQPPPEQPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRIGPGIEVFPPKDYGQQTFETTGVAFGSQATREYSRGSSPEWLHMQIGGGFERTR 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20801322 20803579 + CmPI595203_08g008510.1 Cmu08g0851 422337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0851 298 MobiDBLite consensus disorder prediction 130 150 - -
Cmu08g0851 298 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 93 252 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cmu08g0851 298 MobiDBLite consensus disorder prediction 104 125 - -
Cmu08g0851 298 SMART finulus 183 233 IPR011598 GO:0046983(InterPro)
Cmu08g0851 298 Coils Coil 224 244 - -
Cmu08g0851 298 CDD bHLH_AtBPE_like 167 252 - -
Cmu08g0851 298 MobiDBLite consensus disorder prediction 86 165 - -
Cmu08g0851 298 Gene3D - 174 246 IPR036638 GO:0046983(InterPro)
Cmu08g0851 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 227 IPR011598 GO:0046983(InterPro)
Cmu08g0851 298 FunFam Basic helix-loop-helix transcription factor 174 246 - -
Cmu08g0851 298 Pfam Helix-loop-helix DNA-binding domain 181 228 IPR011598 GO:0046983(InterPro)
Cmu08g0851 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 245 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1706 Cmu-Chr6:28079906 Cmu08g0851 Cmu-Chr8:20801322 1.90E-69 dispersed
Cmu08g0851 Cmu-Chr8:20801322 Cmu09g0819 Cmu-Chr9:7926626 1.40E-33 dispersed
Cmu08g0851 Cmu-Chr8:20801322 Cmu02g0518 Cmu-Chr2:4806900 3.60E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6666 PF00010 HLH 2.50E-08 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0851 - - - 0.0