Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu08g0851 | ATGGATCCACCTACTCTGATCAACGAAGGCTCATTTCCAAGTAACCCAAATGCCAATGCCAATATCACGCCCTTCAATCTCTCAGAGATCTGGCACTTCCCAATTAATGGCGGAACCAGTGTTGAGGAACCTGCACCTTCTCTCGCTCTCAGGATGGCTCACCTCGCTCAAAATTTGGGCCACTTTGGAGAGATTGCCATGGGGAATCCAGAGGTTTCCCCTACTGACCCAGTCACTTTGCAATTGCAGCAGAGACTAGCTCATGGTCATGGTGTTTCCAAGAAGCGCCGTGATGCAGAGCAAGATTCGCCTAAGGTCAGTTCCACCAGCAATGGCAACAATGCCAATGGCAATAGCGGCGCCGCGAATGACTCTGGTGGAAAACGCCTTAAAACAGCAGCGTGTAGAGATGATAACCACGAATCCAAAACAGAAGCGGAACCCAGATCTGGGAAGGCCGAGCAGAACTCCCAGCCACCTCCAGAACAACCCAAACAGGATTACATCCATGTGCGAGCGAGAAGGGGCCAAGCAACTGATAGCCATAGTTTGGCAGAAAGGGCTAGAAGAGAAAAGATAAGTGAGAGAATGAAAATTCTACAAGACTTGGTCCCTGGGTGTAATAAGGTCATTGGAAAAGCACTTGTACTTGATGAGATAATAAATTACATTCAATCACTTCAGCGTCAGGTTGAGTTCTTGTCAATGAAGCTTGAAGCAGTTAATTCGAGAATTGGCCCTGGGATTGAAGTGTTTCCTCCTAAAGATTATGGTCAACAAACATTCGAAACAACTGGTGTTGCATTTGGTTCACAAGCAACAAGAGAATACAGCCGTGGCTCATCACCGGAATGGCTGCATATGCAGATTGGTGGCGGTTTTGAAAGAACGAGGTAG | 897 | 47.38 | MDPPTLINEGSFPSNPNANANITPFNLSEIWHFPINGGTSVEEPAPSLALRMAHLAQNLGHFGEIAMGNPEVSPTDPVTLQLQQRLAHGHGVSKKRRDAEQDSPKVSSTSNGNNANGNSGAANDSGGKRLKTAACRDDNHESKTEAEPRSGKAEQNSQPPPEQPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRIGPGIEVFPPKDYGQQTFETTGVAFGSQATREYSRGSSPEWLHMQIGGGFERTR | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 20801322 | 20803579 | + | CmPI595203_08g008510.1 | Cmu08g0851 | 422337 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu08g0851 | 298 | MobiDBLite | consensus disorder prediction | 130 | 150 | - | - | |
Cmu08g0851 | 298 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 93 | 252 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Cmu08g0851 | 298 | MobiDBLite | consensus disorder prediction | 104 | 125 | - | - | |
Cmu08g0851 | 298 | SMART | finulus | 183 | 233 | IPR011598 | GO:0046983(InterPro) | |
Cmu08g0851 | 298 | Coils | Coil | 224 | 244 | - | - | |
Cmu08g0851 | 298 | CDD | bHLH_AtBPE_like | 167 | 252 | - | - | |
Cmu08g0851 | 298 | MobiDBLite | consensus disorder prediction | 86 | 165 | - | - | |
Cmu08g0851 | 298 | Gene3D | - | 174 | 246 | IPR036638 | GO:0046983(InterPro) | |
Cmu08g0851 | 298 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 177 | 227 | IPR011598 | GO:0046983(InterPro) | |
Cmu08g0851 | 298 | FunFam | Basic helix-loop-helix transcription factor | 174 | 246 | - | - | |
Cmu08g0851 | 298 | Pfam | Helix-loop-helix DNA-binding domain | 181 | 228 | IPR011598 | GO:0046983(InterPro) | |
Cmu08g0851 | 298 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 175 | 245 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu06g1706 | Cmu-Chr6:28079906 | Cmu08g0851 | Cmu-Chr8:20801322 | 1.90E-69 | dispersed | |
Cmu08g0851 | Cmu-Chr8:20801322 | Cmu09g0819 | Cmu-Chr9:7926626 | 1.40E-33 | dispersed | |
Cmu08g0851 | Cmu-Chr8:20801322 | Cmu02g0518 | Cmu-Chr2:4806900 | 3.60E-34 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6666 | PF00010 | HLH | 2.50E-08 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu08g0851 | - | - | - | 0.0 |