Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0853 ATGCAAAGCTTCAATCCCACTTTGAGCAATCCGGGTCCTTCCTTTGACTACTCCACTTCAATCCATCTCACCACCAACCCAACTGCCGCACCACCCCCCGCCACCGCCGCCACCACCGCATACCTCCACCAAATCCAAAAATCCAACCTCATCCAACCCTTTGGCTGCCTTTTAGCCCTCCACCCAACCACCCTCAAACTCATCGCCTTCACCCAAAATGCCCCAGAAATGCTCACCACCGTTGCCCACACCGTCCCCGATGGCGACAACCACCCCCTCCTCGCCATCGGCACGGACCTCCGAGCCATCTTCACCAACCCCACTGCCACTGCCCTCCTCAAGGCCCTCGCCTTCCACGATGTCACCCTCCTCAACCCCATTCTAGTCCACTCCAAGTCCTCAGGGAAGCCCGTCTATGCCATTATCCACCGCGTCACCGGTAGCCTTATCATCGACTTCGAGCCCCTCAAACCCGACCAAGTCCCCGTCACCGCTGCAGGAGCTCTCCAATCCTATAAGCTCGCTGCCAAAGCCATCACTCGTCTCCAGGCTCTCTCTAGTGGGAGCCTGGCTAGACTCTGTGACACCATGGTTCAAGAAGTCTTTGAGTTGACAGGTTACGATAGAATTATGGCATATAGGTTTCATGACGATGATCATGGCGAGGTATTTTCCGAGGTTACAAAGCCTGGCCTTGAACCTTATCTAGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCTAGGTTTTTATTCATGAAGAATAAAGTTAGAATGATTGTGGATTGTAGAGCCAAACATGTGAAAGTCATTCAAGATCACAATCTTGATTTTGATTTGACTTTGTGTGGGTCCACTTTAAGAGCTCCTCATAGTTGCCATTTGCAATATATGGAGAATATGGACTCTATTGCCTCTTTGGTTATGTCCATTGTAGTGAATGAAGAGGAGGATGAAGAGAATTTCGATCAAAATAACAACAATAATGATGCTTCTTTGAAAAAACATAAGAGGAAAAGATTGTGGGGTTTGGTAGTTTGTCATAACACAACTCCTAGATTTGTCCCTTTTCCACTTAGATATGCTTGTGAGTTTCTAGCTCAAGTTTTTGCCATTCATGTCAACAAGGAATTGGAGTTAGAGAATCAAATTTTGGAGAAAAATATCTTGAGAACTCAAACACTTTTATTATGTGACATGTTAATGCGTGATGCTCCTTTAGGAATTGTGTCAAGGACTCCTAATATAATGGATCTTGTCAAATCTGATGGAGCTGCATTATTGTACAATAACAAGGTATGGAGATTAGGGATAACCCCTACTGATTTCCATCTTCAGGACATTGCTTCATGGATTTTTGAGTATCATATGGATTCCACTGGTTTGAGTACTGATAGCTTGTATGATGCCGGGTACCCGGGCGCACTTGCGCTAGGCGATGCAGTGTGCGGGATGGCTGTTGTGAGGATATCTTCCGAGGACATGATTTTCTGGTTTCGATCGCACACCGCATCGGAGATTCTGTGGGGCGGGGCAAAGCATGAGCCTGGTGACAAGGATGATGGAAGGAAAATGCATCCAAGATCATCTTTTAAGGCTTTTCTTGAAGTGGTAAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCAATTCATTCTTTGCAACTTATTTTAAGAAATACTTTTAAAGATACAGATCATATGAGTGAGATTCATAGAAAATCAATACAAACCACAATTAGTGATCTCAAGATTATTGATGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTTAGGTTGATTGAAACAGCCACAGTTCCAATTTTGGCTGTTGATGTAGATGGGCTTGTGAATGGGTGGAACTCAAAAATTGCTGAATTGACTGGACTCTCTGTTCACAAAGCCATTGGCAAGCATTTGCTCACATTAGTGGAGGATTCTTCTGTTGAAATTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGAACATTTTGGTTTAATTTTGCTCCTTTCACATACTTCATATTATTTACCAATATGTATAGTCAAGAGGAAAAAGACGTTCAATTCGAGATAAAAACACACAACTCCGACATCGAGTCGGGCTCCATAAGTCTAATAGTAAATGCTTGTGCAAGCAAAGACTTGGATGAAAATGTGGTGGGAGTGTGCTTCGTAGCACAAGACATAACATGTCAAAAGATGGTAATGGACAAGTTCACAAAACTACAAGGTGATTACAAAGCCATAGTACAAAACCCTAACCCACTAATCCCTCCAATATTTTGGTTAGATGAATTTGGTTGGTGCTCAGAATGGAACTTAGCAATGACAAAGCTAAGTGGATGGTCTCGTGAAGCAGTTCTCAACAAAATGCTTTTAGGAGAAGTTTTTGGAAACTCTTCATCATCTTGTTGCCATCTCAAGAATCAAGAGGCTTTTGTGAATCTTGGGATTGTGTTGAACAATGCAATGAACGGGCAAGATCCTGAAAAGAATATCCCATTTGGTTTCTATGCAAGAAATGGGATTTTTGTAGAATGTCTTCTATGTGTTAATAAGATATTGGATAAAGATGGTGGAGTTATTGGGGTTTTTTGCTTCTTGCAACTTGCTAGCCAAGAGCTTCAACAAGCATTGAGTATTCAAAAATTATGTGAGAGAACAGCTTTGAACAGATTGAAGGCATTGGGATATATGAAGAGGCAGATTGAAAATCCTCTTTGTGGGATCATTTTTTCAAGCAAAATGTTGCAGCAAACTCAGTTGGGATTGGAACAGAAGCAACTTTTGCATAATAGTGTCAATTGTCAAAGGCAGATCTCCAAGGTTCTTGATGAATCTCATGATCTTGATCGGATTATTCAAGGTTTCATTGATTTAGAAATGGTTGAGTTTTCATTGTATGAAGTATTGGTGGTATCAATTAGTCAAGTGATGATGAAGAGCAAAGGGAAAGGTATCCAAATAGCAAATGAGATTGCAGAAGAGATGATGTCTGAGACTTTATATGGAGACAATTTGAGACTTCAACAAGTGATGGCTGATTTCTTGTTGACATCAGTTAATTATGCACCAACAGGAGCCCAACTTATGGTTTCAACAAATTTGACTAAACATCATTTACGAAACTCACTACATCTTGTGCATCTTGAATTCAGGATAAGATATGTTGGAGGAGGAATACCAGAATCATTGTTGAATGAGATGTTTGGGAATGATTATGAGGATGCAACTGAAGAAGGTTTCAGCTTGTTTATAAGTAGAAAGCTAGTGAAGATGATGAATGGAGATGTGAGACATGTAAGGGAAGCAGACAAGTCAAGCTTCATCATTACTCTTGAGTTTGCTGCCTGCTCATAA 3378 41.77 MQSFNPTLSNPGPSFDYSTSIHLTTNPTAAPPPATAATTAYLHQIQKSNLIQPFGCLLALHPTTLKLIAFTQNAPEMLTTVAHTVPDGDNHPLLAIGTDLRAIFTNPTATALLKALAFHDVTLLNPILVHSKSSGKPVYAIIHRVTGSLIIDFEPLKPDQVPVTAAGALQSYKLAAKAITRLQALSSGSLARLCDTMVQEVFELTGYDRIMAYRFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVIQDHNLDFDLTLCGSTLRAPHSCHLQYMENMDSIASLVMSIVVNEEEDEENFDQNNNNNDASLKKHKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQILEKNILRTQTLLLCDMLMRDAPLGIVSRTPNIMDLVKSDGAALLYNNKVWRLGITPTDFHLQDIASWIFEYHMDSTGLSTDSLYDAGYPGALALGDAVCGMAVVRISSEDMIFWFRSHTASEILWGGAKHEPGDKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTFKDTDHMSEIHRKSIQTTISDLKIIDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLSVHKAIGKHLLTLVEDSSVEIVKKMLFLALQGTFWFNFAPFTYFILFTNMYSQEEKDVQFEIKTHNSDIESGSISLIVNACASKDLDENVVGVCFVAQDITCQKMVMDKFTKLQGDYKAIVQNPNPLIPPIFWLDEFGWCSEWNLAMTKLSGWSREAVLNKMLLGEVFGNSSSSCCHLKNQEAFVNLGIVLNNAMNGQDPEKNIPFGFYARNGIFVECLLCVNKILDKDGGVIGVFCFLQLASQELQQALSIQKLCERTALNRLKALGYMKRQIENPLCGIIFSSKMLQQTQLGLEQKQLLHNSVNCQRQISKVLDESHDLDRIIQGFIDLEMVEFSLYEVLVVSISQVMMKSKGKGIQIANEIAEEMMSETLYGDNLRLQQVMADFLLTSVNYAPTGAQLMVSTNLTKHHLRNSLHLVHLEFRIRYVGGGIPESLLNEMFGNDYEDATEEGFSLFISRKLVKMMNGDVRHVREADKSSFIITLEFAACS 1125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20818450 20825179 + CmPI595203_08g008530.1 Cmu08g0853 422339

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0853 1125 Pfam His Kinase A (phospho-acceptor) domain 900 961 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cmu08g0853 1125 Gene3D - 170 541 IPR029016 -
Cmu08g0853 1125 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 954 1119 IPR036890 -
Cmu08g0853 1125 ProSiteProfiles PAS repeat profile. 598 668 IPR000014 -
Cmu08g0853 1125 SMART pas_2 750 820 IPR000014 -
Cmu08g0853 1125 SMART pas_2 600 666 IPR000014 -
Cmu08g0853 1125 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 189 369 IPR016132 -
Cmu08g0853 1125 SUPERFAMILY GAF domain-like 387 565 - -
Cmu08g0853 1125 Pfam GAF domain 190 378 IPR003018 GO:0005515(InterPro)
Cmu08g0853 1125 Gene3D PAS domain 44 292 - -
Cmu08g0853 1125 Gene3D - 941 1117 IPR036890 -
Cmu08g0853 1125 FunFam Phytochrome 384 514 - -
Cmu08g0853 1125 ProSiteProfiles Histidine kinase domain profile. 904 1123 IPR005467 -
Cmu08g0853 1125 Pfam PAS fold 751 875 IPR013767 GO:0006355(InterPro)
Cmu08g0853 1125 Pfam PAS fold 601 667 IPR013767 GO:0006355(InterPro)
Cmu08g0853 1125 SUPERFAMILY GAF domain-like 169 376 - -
Cmu08g0853 1125 Gene3D PAS domain 597 740 - -
Cmu08g0853 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 604 670 IPR035965 -
Cmu08g0853 1125 PIRSF Phytochrome_conventional 2 1125 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Cmu08g0853 1125 PRINTS Phytochrome signature 410 430 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0853 1125 PRINTS Phytochrome signature 528 546 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0853 1125 PRINTS Phytochrome signature 204 223 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0853 1125 PRINTS Phytochrome signature 495 514 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0853 1125 PRINTS Phytochrome signature 713 730 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0853 1125 PRINTS Phytochrome signature 289 310 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0853 1125 PRINTS Phytochrome signature 733 753 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0853 1125 PRINTS Phytochrome signature 104 126 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0853 1125 ProSiteProfiles PAS repeat profile. 751 803 IPR000014 -
Cmu08g0853 1125 CDD PAS 763 875 IPR000014 -
Cmu08g0853 1125 Coils Coil 376 396 - -
Cmu08g0853 1125 SMART HKATPase_4 1010 1123 IPR003594 -
Cmu08g0853 1125 Gene3D - 384 558 IPR043150 -
Cmu08g0853 1125 PANTHER OS08G0260000 PROTEIN 10 668 - -
Cmu08g0853 1125 Pfam Phytochrome region 397 567 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0853 1125 Pfam PAS fold 40 155 IPR013654 GO:0006355(InterPro)
Cmu08g0853 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 45 159 IPR035965 -
Cmu08g0853 1125 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1010 1121 IPR003594 -
Cmu08g0853 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 765 873 IPR035965 -
Cmu08g0853 1125 SMART gaf_1 189 389 IPR003018 GO:0005515(InterPro)
Cmu08g0853 1125 ProSitePatterns Phytochrome chromophore attachment site signature. 289 298 IPR013516 -
Cmu08g0853 1125 CDD PAS 609 673 IPR000014 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0853 K12120 - - csv:101219585 1913.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0850 Cmu-Chr8:20777652 Cmu08g0853 Cmu-Chr8:20818450 0.00E+00 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu10g0909 . 5 1220 Histidine Kinase Gene Family AT2G17820 64.2 0.0e+00 1453.0
Cmu11g0104 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1344.7
Cmu01g0644 . 24 971 Histidine Kinase Gene Family AT2G01830 71.5 0.0e+00 1296.2
Cmu02g0274 . 290 1242 Histidine Kinase Gene Family AT2G01830 53.7 2.3e-277 952.2
Cmu06g0214 . 97 1023 Histidine Kinase Gene Family AT2G01830 53.7 5.7e-268 921.0
Cmu02g0939 . 304 1252 Histidine Kinase Gene Family AT2G01830 51.9 7.0e-266 914.1
Cmu05g1639 . 1 997 Histidine Kinase Gene Family AT5G10720 57.3 8.5e-292 1000.0
Cmu08g0850 . 167 1286 Histidine Kinase Gene Family AT1G09570 80.2 0.0e+00 1831.6
Cmu08g0853 . 12 1125 Histidine Kinase Gene Family AT1G09570 70.3 0.0e+00 1557.3
Cmu02g0290 . 18 1112 Histidine Kinase Gene Family AT1G09570 54.8 0.0e+00 1205.3
Cmu05g0730 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.4 0.0e+00 1196.4
Cmu05g0730 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.7 0.0e+00 1670.2
Cmu03g1310 . 31 1051 Histidine Kinase Gene Family AT2G18790 60.8 0.0e+00 1243.0
Cmu08g0850 . 187 1220 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1090.1
Cmu02g0290 . 26 1069 Histidine Kinase Gene Family AT2G18790 52.2 0.0e+00 1078.2
Cmu02g0290 . 12 1116 Histidine Kinase Gene Family AT5G35840 61.6 0.0e+00 1362.4
Cmu05g0730 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.9 0.0e+00 1152.9
Cmu08g0850 . 175 1280 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1117.1
Cmu05g0730 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.6 0.0e+00 1708.3
Cmu03g1310 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.0 0.0e+00 1282.7
Cmu08g0850 . 174 1281 Histidine Kinase Gene Family AT4G16250 52.9 0.0e+00 1137.9
Cmu02g0290 . 26 1115 Histidine Kinase Gene Family AT4G16250 52.5 0.0e+00 1117.4
Cmu03g1310 . 15 1113 Histidine Kinase Gene Family AT4G18130 63.2 0.0e+00 1370.5
Cmu05g0730 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.8 0.0e+00 1272.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56