Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0853 ATGCAAAGCTTCAATCCCACTTTGAGCAATCCGGGTCCTTCCTTTGACTACTCCACTTCAATCCATCTCACCACCAACCCAACTGCCGCACCACCCCCCGCCACCGCCGCCACCACCGCATACCTCCACCAAATCCAAAAATCCAACCTCATCCAACCCTTTGGCTGCCTTTTAGCCCTCCACCCAACCACCCTCAAACTCATCGCCTTCACCCAAAATGCCCCAGAAATGCTCACCACCGTTGCCCACACCGTCCCCGATGGCGACAACCACCCCCTCCTCGCCATCGGCACGGACCTCCGAGCCATCTTCACCAACCCCACTGCCACTGCCCTCCTCAAGGCCCTCGCCTTCCACGATGTCACCCTCCTCAACCCCATTCTAGTCCACTCCAAGTCCTCAGGGAAGCCCGTCTATGCCATTATCCACCGCGTCACCGGTAGCCTTATCATCGACTTCGAGCCCCTCAAACCCGACCAAGTCCCCGTCACCGCTGCAGGAGCTCTCCAATCCTATAAGCTCGCTGCCAAAGCCATCACTCGTCTCCAGGCTCTCTCTAGTGGGAGCCTGGCTAGACTCTGTGACACCATGGTTCAAGAAGTCTTTGAGTTGACAGGTTACGATAGAATTATGGCATATAGGTTTCATGACGATGATCATGGCGAGGTATTTTCCGAGGTTACAAAGCCTGGCCTTGAACCTTATCTAGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCTAGGTTTTTATTCATGAAGAATAAAGTTAGAATGATTGTGGATTGTAGAGCCAAACATGTGAAAGTCATTCAAGATCACAATCTTGATTTTGATTTGACTTTGTGTGGGTCCACTTTAAGAGCTCCTCATAGTTGCCATTTGCAATATATGGAGAATATGGACTCTATTGCCTCTTTGGTTATGTCCATTGTAGTGAATGAAGAGGAGGATGAAGAGAATTTCGATCAAAATAACAACAATAATGATGCTTCTTTGAAAAAACATAAGAGGAAAAGATTGTGGGGTTTGGTAGTTTGTCATAACACAACTCCTAGATTTGTCCCTTTTCCACTTAGATATGCTTGTGAGTTTCTAGCTCAAGTTTTTGCCATTCATGTCAACAAGGAATTGGAGTTAGAGAATCAAATTTTGGAGAAAAATATCTTGAGAACTCAAACACTTTTATTATGTGACATGTTAATGCGTGATGCTCCTTTAGGAATTGTGTCAAGGACTCCTAATATAATGGATCTTGTCAAATCTGATGGAGCTGCATTATTGTACAATAACAAGGTATGGAGATTAGGGATAACCCCTACTGATTTCCATCTTCAGGACATTGCTTCATGGATTTTTGAGTATCATATGGATTCCACTGGTTTGAGTACTGATAGCTTGTATGATGCCGGGTACCCGGGCGCACTTGCGCTAGGCGATGCAGTGTGCGGGATGGCTGTTGTGAGGATATCTTCCGAGGACATGATTTTCTGGTTTCGATCGCACACCGCATCGGAGATTCTGTGGGGCGGGGCAAAGCATGAGCCTGGTGACAAGGATGATGGAAGGAAAATGCATCCAAGATCATCTTTTAAGGCTTTTCTTGAAGTGGTAAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCAATTCATTCTTTGCAACTTATTTTAAGAAATACTTTTAAAGATACAGATCATATGAGTGAGATTCATAGAAAATCAATACAAACCACAATTAGTGATCTCAAGATTATTGATGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTTAGGTTGATTGAAACAGCCACAGTTCCAATTTTGGCTGTTGATGTAGATGGGCTTGTGAATGGGTGGAACTCAAAAATTGCTGAATTGACTGGACTCTCTGTTCACAAAGCCATTGGCAAGCATTTGCTCACATTAGTGGAGGATTCTTCTGTTGAAATTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGAACATTTTGGTTTAATTTTGCTCCTTTCACATACTTCATATTATTTACCAATATGTATAGTCAAGAGGAAAAAGACGTTCAATTCGAGATAAAAACACACAACTCCGACATCGAGTCGGGCTCCATAAGTCTAATAGTAAATGCTTGTGCAAGCAAAGACTTGGATGAAAATGTGGTGGGAGTGTGCTTCGTAGCACAAGACATAACATGTCAAAAGATGGTAATGGACAAGTTCACAAAACTACAAGGTGATTACAAAGCCATAGTACAAAACCCTAACCCACTAATCCCTCCAATATTTTGGTTAGATGAATTTGGTTGGTGCTCAGAATGGAACTTAGCAATGACAAAGCTAAGTGGATGGTCTCGTGAAGCAGTTCTCAACAAAATGCTTTTAGGAGAAGTTTTTGGAAACTCTTCATCATCTTGTTGCCATCTCAAGAATCAAGAGGCTTTTGTGAATCTTGGGATTGTGTTGAACAATGCAATGAACGGGCAAGATCCTGAAAAGAATATCCCATTTGGTTTCTATGCAAGAAATGGGATTTTTGTAGAATGTCTTCTATGTGTTAATAAGATATTGGATAAAGATGGTGGAGTTATTGGGGTTTTTTGCTTCTTGCAACTTGCTAGCCAAGAGCTTCAACAAGCATTGAGTATTCAAAAATTATGTGAGAGAACAGCTTTGAACAGATTGAAGGCATTGGGATATATGAAGAGGCAGATTGAAAATCCTCTTTGTGGGATCATTTTTTCAAGCAAAATGTTGCAGCAAACTCAGTTGGGATTGGAACAGAAGCAACTTTTGCATAATAGTGTCAATTGTCAAAGGCAGATCTCCAAGGTTCTTGATGAATCTCATGATCTTGATCGGATTATTCAAGGTTTCATTGATTTAGAAATGGTTGAGTTTTCATTGTATGAAGTATTGGTGGTATCAATTAGTCAAGTGATGATGAAGAGCAAAGGGAAAGGTATCCAAATAGCAAATGAGATTGCAGAAGAGATGATGTCTGAGACTTTATATGGAGACAATTTGAGACTTCAACAAGTGATGGCTGATTTCTTGTTGACATCAGTTAATTATGCACCAACAGGAGCCCAACTTATGGTTTCAACAAATTTGACTAAACATCATTTACGAAACTCACTACATCTTGTGCATCTTGAATTCAGGATAAGATATGTTGGAGGAGGAATACCAGAATCATTGTTGAATGAGATGTTTGGGAATGATTATGAGGATGCAACTGAAGAAGGTTTCAGCTTGTTTATAAGTAGAAAGCTAGTGAAGATGATGAATGGAGATGTGAGACATGTAAGGGAAGCAGACAAGTCAAGCTTCATCATTACTCTTGAGTTTGCTGCCTGCTCATAA 3378 41.77 MQSFNPTLSNPGPSFDYSTSIHLTTNPTAAPPPATAATTAYLHQIQKSNLIQPFGCLLALHPTTLKLIAFTQNAPEMLTTVAHTVPDGDNHPLLAIGTDLRAIFTNPTATALLKALAFHDVTLLNPILVHSKSSGKPVYAIIHRVTGSLIIDFEPLKPDQVPVTAAGALQSYKLAAKAITRLQALSSGSLARLCDTMVQEVFELTGYDRIMAYRFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVIQDHNLDFDLTLCGSTLRAPHSCHLQYMENMDSIASLVMSIVVNEEEDEENFDQNNNNNDASLKKHKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQILEKNILRTQTLLLCDMLMRDAPLGIVSRTPNIMDLVKSDGAALLYNNKVWRLGITPTDFHLQDIASWIFEYHMDSTGLSTDSLYDAGYPGALALGDAVCGMAVVRISSEDMIFWFRSHTASEILWGGAKHEPGDKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTFKDTDHMSEIHRKSIQTTISDLKIIDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLSVHKAIGKHLLTLVEDSSVEIVKKMLFLALQGTFWFNFAPFTYFILFTNMYSQEEKDVQFEIKTHNSDIESGSISLIVNACASKDLDENVVGVCFVAQDITCQKMVMDKFTKLQGDYKAIVQNPNPLIPPIFWLDEFGWCSEWNLAMTKLSGWSREAVLNKMLLGEVFGNSSSSCCHLKNQEAFVNLGIVLNNAMNGQDPEKNIPFGFYARNGIFVECLLCVNKILDKDGGVIGVFCFLQLASQELQQALSIQKLCERTALNRLKALGYMKRQIENPLCGIIFSSKMLQQTQLGLEQKQLLHNSVNCQRQISKVLDESHDLDRIIQGFIDLEMVEFSLYEVLVVSISQVMMKSKGKGIQIANEIAEEMMSETLYGDNLRLQQVMADFLLTSVNYAPTGAQLMVSTNLTKHHLRNSLHLVHLEFRIRYVGGGIPESLLNEMFGNDYEDATEEGFSLFISRKLVKMMNGDVRHVREADKSSFIITLEFAACS 1125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20818450 20825179 + CmPI595203_08g008530.1 Cmu08g0853 422339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0853 1125 Pfam His Kinase A (phospho-acceptor) domain 900 961 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cmu08g0853 1125 Gene3D - 170 541 IPR029016 -
Cmu08g0853 1125 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 954 1119 IPR036890 -
Cmu08g0853 1125 ProSiteProfiles PAS repeat profile. 598 668 IPR000014 -
Cmu08g0853 1125 SMART pas_2 750 820 IPR000014 -
Cmu08g0853 1125 SMART pas_2 600 666 IPR000014 -
Cmu08g0853 1125 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 189 369 IPR016132 -
Cmu08g0853 1125 SUPERFAMILY GAF domain-like 387 565 - -
Cmu08g0853 1125 Pfam GAF domain 190 378 IPR003018 GO:0005515(InterPro)
Cmu08g0853 1125 Gene3D PAS domain 44 292 - -
Cmu08g0853 1125 Gene3D - 941 1117 IPR036890 -
Cmu08g0853 1125 FunFam Phytochrome 384 514 - -
Cmu08g0853 1125 ProSiteProfiles Histidine kinase domain profile. 904 1123 IPR005467 -
Cmu08g0853 1125 Pfam PAS fold 751 875 IPR013767 GO:0006355(InterPro)
Cmu08g0853 1125 Pfam PAS fold 601 667 IPR013767 GO:0006355(InterPro)
Cmu08g0853 1125 SUPERFAMILY GAF domain-like 169 376 - -
Cmu08g0853 1125 Gene3D PAS domain 597 740 - -
Cmu08g0853 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 604 670 IPR035965 -
Cmu08g0853 1125 PIRSF Phytochrome_conventional 2 1125 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Cmu08g0853 1125 PRINTS Phytochrome signature 410 430 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0853 1125 PRINTS Phytochrome signature 528 546 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0853 1125 PRINTS Phytochrome signature 204 223 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0853 1125 PRINTS Phytochrome signature 495 514 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0853 1125 PRINTS Phytochrome signature 713 730 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0853 1125 PRINTS Phytochrome signature 289 310 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0853 1125 PRINTS Phytochrome signature 733 753 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0853 1125 PRINTS Phytochrome signature 104 126 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0853 1125 ProSiteProfiles PAS repeat profile. 751 803 IPR000014 -
Cmu08g0853 1125 CDD PAS 763 875 IPR000014 -
Cmu08g0853 1125 Coils Coil 376 396 - -
Cmu08g0853 1125 SMART HKATPase_4 1010 1123 IPR003594 -
Cmu08g0853 1125 Gene3D - 384 558 IPR043150 -
Cmu08g0853 1125 PANTHER OS08G0260000 PROTEIN 10 668 - -
Cmu08g0853 1125 Pfam Phytochrome region 397 567 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cmu08g0853 1125 Pfam PAS fold 40 155 IPR013654 GO:0006355(InterPro)
Cmu08g0853 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 45 159 IPR035965 -
Cmu08g0853 1125 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1010 1121 IPR003594 -
Cmu08g0853 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 765 873 IPR035965 -
Cmu08g0853 1125 SMART gaf_1 189 389 IPR003018 GO:0005515(InterPro)
Cmu08g0853 1125 ProSitePatterns Phytochrome chromophore attachment site signature. 289 298 IPR013516 -
Cmu08g0853 1125 CDD PAS 609 673 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0850 Cmu-Chr8:20777652 Cmu08g0853 Cmu-Chr8:20818450 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0853 K12120 - csv:101219585 1913.66