Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0870 ATGTCGGGATCTGAAACTGGTGTGATCACCAGTAGAGAACCCTTCAACGTCGGCGTTCAAAATAGCTCCTTACAGTCGCAGTCGGCGGCCCAAAATATGCGATTAGCCTTCAGCGCCGATGGCCCAGCCGTCTACAAGCCTGTGACTCCTTCAACCTCACCGTCCTACCAATCCTCCATGGCCGGGGTTTCTGGTAACGCCGGAATTGAAGGATCGGCTGGTGGAGGAGGGTCTATGTTGCCTCATGGTTTCAACATAAATTCAGTGGGCAGTGAGCAGATAAAGAGGAAGAGGGGCAGGCCAAGGAAGTATGGACCAGATGGCTCCATGGCTTTAGCTTTGGGTTCTGGGCCGCCATCAGGAAGTGGAGGTTTTCCTCCTTCAAATATGGCTAATTCTGCTTCTGAAGGATTGGGGTCACCAAATTCACTGAAGAAAACTAAAGGCAGGCCACCTGGTTCTAAGAAAAAGCAACAATTGGAAGCTTTAGGATCGGCTGGTATTGGATTCACTCCACATGTTATTGATGTGAAAGCTGGAGAGGATGTATCGTCAAAAATAATGTCCTTTTCTCAGAATGGCCCCAGAGCTATATGTATTCTGTCTGCAAATGGAGCAATATCAAATGTGACTTTACGTCAACCTGCTACATCTGGTGGCACTGTTACTTATGAGGGGCCGTTTGAAATTTTGTCACTTTCGGGTTCATTTCTCCTTTCTGAAAATGGTGGTCAGAGAAGCAGAACCGGTGGGTTGAGTGTGTCTTTGTCCGGTCCAGATGGCCGAGTTTTAGGTGGTGGTGTGGCGGGTCTTCTCACAGCATTATCTCCTGTTCAGGTGGTCGTGGGAAGTTTCATAGCCGACAGCAACAAGGAACCGAAGTCAGTGCGCCAAAATGAACCCATCACTGTCTCACCAATGCTAAACCCAGTTGGCTTCGGTCACTTGACAGGAGGAGCCAGTAGTCCATCTCATGGGACACTGAGCGAATCTTCCGGTGGCAGCCCCCTCAACAACAGCTCTGGAGCCTGTAACAACACCAACCATCCACAGGGCATGTCCGGCATGCCATGGAAGCTTACTGTTTTAATTCTAACTAATCCAATGATGGTTGATCCTGATTTAATGGTTCCATTTAAGCTCTTGCTTGCGAATTGTCCACACCAGACCAGACGAGAAATTCTCCATAAAATTCTCTCTCAATTTCCTATTCATCTCTCCGCCAGCAGCTTCAGATTTTTTCATATTGCTGGACTTGGTGGAATCAACAAATCCGTATTTTCCTGTTTCGTTTCACTGCTTCGGTGTTTTGTAAAGGGGAAAGGAAAAAGGATTAGGAATTGGGAAATAGTCATGGCTGTTCTTCCATTGGGAATACGCAGCAGGTGA 1389 47.66 MSGSETGVITSREPFNVGVQNSSLQSQSAAQNMRLAFSADGPAVYKPVTPSTSPSYQSSMAGVSGNAGIEGSAGGGGSMLPHGFNINSVGSEQIKRKRGRPRKYGPDGSMALALGSGPPSGSGGFPPSNMANSASEGLGSPNSLKKTKGRPPGSKKKQQLEALGSAGIGFTPHVIDVKAGEDVSSKIMSFSQNGPRAICILSANGAISNVTLRQPATSGGTVTYEGPFEILSLSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTALSPVQVVVGSFIADSNKEPKSVRQNEPITVSPMLNPVGFGHLTGGASSPSHGTLSESSGGSPLNNSSGACNNTNHPQGMSGMPWKLTVLILTNPMMVDPDLMVPFKLLLANCPHQTRREILHKILSQFPIHLSASSFRFFHIAGLGGINKSVFSCFVSLLRCFVKGKGKRIRNWEIVMAVLPLGIRSR 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20983940 20992756 + CmPI595203_08g008700.1 Cmu08g0870 422356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0870 462 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 335 IPR039605 GO:0003680(InterPro)
Cmu08g0870 462 MobiDBLite consensus disorder prediction 72 159 - -
Cmu08g0870 462 Gene3D - 172 307 - -
Cmu08g0870 462 MobiDBLite consensus disorder prediction 122 142 - -
Cmu08g0870 462 MobiDBLite consensus disorder prediction 313 350 - -
Cmu08g0870 462 MobiDBLite consensus disorder prediction 320 350 - -
Cmu08g0870 462 SUPERFAMILY AF0104/ALDC/Ptd012-like 170 287 - -
Cmu08g0870 462 CDD DUF296 171 285 IPR005175 -
Cmu08g0870 462 FunFam AT-hook motif nuclear-localized protein 1-like 172 302 - -
Cmu08g0870 462 Pfam Plants and Prokaryotes Conserved (PCC) domain 172 286 IPR005175 -
Cmu08g0870 462 ProSiteProfiles PPC domain profile profile. 166 306 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0266 Cmu-Chr1:2688915 Cmu08g0870 Cmu-Chr8:20983940 1.20E-41 dispersed
Cmu02g1688 Cmu-Chr2:30738360 Cmu08g0870 Cmu-Chr8:20983940 9.10E-40 dispersed
Cmu06g0374 Cmu-Chr6:4281642 Cmu08g0870 Cmu-Chr8:20983940 4.60E-62 dispersed
Cmu08g0870 Cmu-Chr8:20983940 Cmu11g1886 Cmu-Chr11:30893192 2.00E-92 dispersed
Cmu08g0870 Cmu-Chr8:20983940 Cmu10g1021 Cmu-Chr10:2167894 6.30E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0870 - - - 0.0