Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0877 ATGGGCGGCGGTGGCGGTAGCAGCGGTGTTGTGCCAAGTAGGGAGTTAGATCAAACTCCGACGTGGGCCGTTGCCTCTGTTTGTGCAATCATCATTCTTATTTCCATTATATTGGAAAAGGTTCTTCACATGGTTGGAGAGCTATTCCAAAAAAGGAAAAAGAAAGCATTGTATGAAGCGCTTGAGAAAGTTAAAGGCGAGCTTATGGTTTTAGGATTCATTTCTTTGCTCTTAACATTCGGACAAAATTATATTGCTAAAGTTTGCATACCCTCAAAATATGCAAATACTATGTTGCCTTGCCCTTATAGAGGGACTCTACCTAAAAGCTCCCACGGCCTCGAGCCTCAAGATCACGACGAAGAGACTACAGATCATCACCGTAGGCTTCTTTGGTACGAGCATCGACGTCGTCTTGGTGGCAGTGCTTCCGTAGCAAGTTGCAAAACAGGGTATACACAACTTATATCTTTAAATGGTTTGCATCAAATACATATCTTCATCTTCTTTCTAGCCGTCCTCCATGTTGTATTTAGCGGCATAACCATGACTCTTGGGAGATTGAAAATTCGTGGGTGGAAGGTTTGGGAAAAACAGACTGAACAAGAACATGACGCCATGAACGATCCTACAAGGTTCAGACTTACTCACGAGACTTCCTTTGTTAGAGATCACAGCAGTTTTTGGACCAAAACACCCCTCTCCTTTTACTTTGTATGCTTTTGGAGGCAATTCCTGAGGTCCGTTAGTAGGGCAGATTACTTGTCTCTTAGACATGGTTTTGTCACTGTTCATTTAGCCCCAGGGAGTAAATTTGACTTTCAAAAGTACATCAAAAGATCATTAGAAGATGACTTTAAGGTGGTCGTGGGAATCAGTCCTCTACTATGGGCATCAATGGTGCTTTTTCTACTTCTCAATGTTAGTGCCGTTGGAACGAAGCTGCAAGGAATTATAACACAAATGGCTCTTGAAATCAAGGAAAGGCATGCAGTGGTTCAAGGGATTCCCCTCGTCCAAGTCTCTGATAGACACTTTTGGTTTAGTTGGCCGGTTTTGGTTCTTTATCTCATCCATTATGTCCTCTTCCAGTATGAATTTGGGTTGAGATCATGTTTTCACGACAATTTTGATCTTATTATCATCAGAGTTGCCCTTGGGGTTGGAGTCCAAATTTTGTGCAGCTACATTACACTTCCATTATATGCACTTGTTACTCAGATGGGATCAACGATGAAGAAATCCATATTTGATGAACAAACTTCAAAAGCATTAAAGCAATGGCATAGAAGTGCTTTGAAGAAAAAGAACGAAGGGGGAAAGCCCGATTCAACGCCGATGCGAACTTTAGGCGGCAGCGGCGGCGGAGGAGGAGGAAGCCCCCCCGAGTCACCGACGCACTCCCCGCGTGAATTCCAACATCAATTGGTCTCTCAACCGTTGCCAACCGACGTCGAAGCCTCCACCATTCCTTCAGCCAACATAATGACCACCGTTGATCTCCATCAACATCAGCAAAACTATACCAATCTCCATGTGTTGCTTCCTTTCCCTCCCCATCATAGCGAGCTCGATGAGGTAAAATATGGCCATCGTCACCACATCCTCGTCACTCGTAAACTCATAGTTTGGAAACAACTTACCCTATTTAGACCCATTCATATCAATCCTATCGGCCAAACTCAGAGTATTCCCTCCGCATTGCCTTTGCCCTATGGTGCGATCTCTTCCCGATCCAGAGTGAGTTCATCTTTTGAAGTACCGACGAGGAAACTAAAAATGGCATTCAAGTTCGATCTGCTCCTTATCACTCTCGCTGTGATCCTTTCTCCTGTACTTTCCGATCTGATCTTCTCCAAGGTTGATCGTCGGATTGACTTGACTTCACAAATTGTTCGCATATCTTCAACTATAAGGGTGGAAAATGAAGGGACTGATGTGGTGTCTGAAGTACTGTTAACCTTTCCCGAGGAACAAGCAAAACACTTGGCTCATATCCAAGCAACATTGAATGAAGGAAAAGGAAAAACCAAAGGATCTGCTATAAAGTTTCCTGTCGATGTTGTTTATCCCAAGGAAATGCCTCCAGCATTGAAATTTTACTCAGTGTCTCTACCAAAGGGACTAAACAAGGGTGATAGCTTGACTTTTGATGTGTTAGCTGTTTTCACTCATGTTCTGCGTCCATTCCCAGAGACAATCACTCAAGCTGATGTTCAGTTTGTAGTGTTTCTTGACAGTGCATACTTTTTGTCTCCTTATACTGTCAAGGTCCAGTCACTAAGTGTTAAATTGCCCGAAGCAAGAATTGAGTCTTATACAAAATTGGAAAATACGAAGATTCATGGTTCTGAGATCAAATATGGTCCTTATGAGAATCTTCCCCCATATTCATTTACACCCATACGCTTTCATTTTGAAAACAATAAGCCATTTCCTGTTGCTCAAGAGCTTGTCCGTGAGATAGAAATTTCTCACTGGGGCAGCATTCAAATAACAGAGCATTATAATCTTGTTCATGGTGGTGCTCAAAGTAGGGGGGAATTTTCCAGGCTTGATTATCAGGCCAGACCTTATGCAAAAGGTGCTTCAGCATTTAGGAATCTTGTTGCAAAACTACCACCTAGAACTCATTCAGTATACTATAGAGATGAAATTGGAAACATCTCTACATCTCATCTATGGGGTGATTCTAAAAAGACAGAGCTGGAGATTGAACCTAGATATCCAATGTTTGGTGGTTGGAGAACTTCTTTTACTATTGGATACAGTTTGCCACTTCAGGATTTTCTATTTCAGGATCAGGGAAAACGTTTTCTCAACATCTCTTTTGGTTCTCCTATAAATGACGTTGTGATTGATAGGCTTATTGTCAGGGTTGTTTTACCCGAGGGCTCCAGTGATATATCTGTGTATGTTCCATTTTCTCATAAACAGTGGCATGAGACAAAATTTTCACACTTGGACATTGAAGGTAGACCAGTGGTTGTTCTGGAGAAGGAAAATGTTGTGCCAGAGCATAATCAGCATTTCCAGGTCTACTACAAATTCAACAGCATTTCAATGCTTAGGGAGCCTCTGATGTTGATTTTTGGATTCTTTATCCTTTTTGTCTCATGCATCATTTATATGCATTCTGACATGTCAATTTCGAAGTCTTCTGCTTCTTATTTAGCAAAACTACAATGGGATGAGGTGCAAACTGTGATTCAACAAGTTCAGAATGTTATCAACAGATGCTTAACCATACATGATAAACTGGAAGCATCTTTGCGTGATCTTTCTCGAACTGGTGACGTCCAAGCTTGTAAAGCAGTTCGCAAAACAGTTGATGCTTCATTGAAAGAGCTTTCAAAAGAGTTGAAGCCTTTGATTTCATTCTTGCAGTCTTCCCAGCAGGCCACCCATATATTGCCCAAGGTGGAAGAGCTGGTGGCCAAGGAGAGAGATCTGCAAGAGAGGTTGGTTGCGAAACACACAACGGTGGTGGACTGCTATGAGAAGAAGCTTGGGGGACGTGAAATTGAGAACAGAGTTGCTTCACAACAGCAAAGAATTACAACATTAAGGCAAGAAGTTGACGATCTTCTCGAGTTCATTGATGAAATATAA 3612 42.11 MGGGGGSSGVVPSRELDQTPTWAVASVCAIIILISIILEKVLHMVGELFQKRKKKALYEALEKVKGELMVLGFISLLLTFGQNYIAKVCIPSKYANTMLPCPYRGTLPKSSHGLEPQDHDEETTDHHRRLLWYEHRRRLGGSASVASCKTGYTQLISLNGLHQIHIFIFFLAVLHVVFSGITMTLGRLKIRGWKVWEKQTEQEHDAMNDPTRFRLTHETSFVRDHSSFWTKTPLSFYFVCFWRQFLRSVSRADYLSLRHGFVTVHLAPGSKFDFQKYIKRSLEDDFKVVVGISPLLWASMVLFLLLNVSAVGTKLQGIITQMALEIKERHAVVQGIPLVQVSDRHFWFSWPVLVLYLIHYVLFQYEFGLRSCFHDNFDLIIIRVALGVGVQILCSYITLPLYALVTQMGSTMKKSIFDEQTSKALKQWHRSALKKKNEGGKPDSTPMRTLGGSGGGGGGSPPESPTHSPREFQHQLVSQPLPTDVEASTIPSANIMTTVDLHQHQQNYTNLHVLLPFPPHHSELDEVKYGHRHHILVTRKLIVWKQLTLFRPIHINPIGQTQSIPSALPLPYGAISSRSRVSSSFEVPTRKLKMAFKFDLLLITLAVILSPVLSDLIFSKVDRRIDLTSQIVRISSTIRVENEGTDVVSEVLLTFPEEQAKHLAHIQATLNEGKGKTKGSAIKFPVDVVYPKEMPPALKFYSVSLPKGLNKGDSLTFDVLAVFTHVLRPFPETITQADVQFVVFLDSAYFLSPYTVKVQSLSVKLPEARIESYTKLENTKIHGSEIKYGPYENLPPYSFTPIRFHFENNKPFPVAQELVREIEISHWGSIQITEHYNLVHGGAQSRGEFSRLDYQARPYAKGASAFRNLVAKLPPRTHSVYYRDEIGNISTSHLWGDSKKTELEIEPRYPMFGGWRTSFTIGYSLPLQDFLFQDQGKRFLNISFGSPINDVVIDRLIVRVVLPEGSSDISVYVPFSHKQWHETKFSHLDIEGRPVVVLEKENVVPEHNQHFQVYYKFNSISMLREPLMLIFGFFILFVSCIIYMHSDMSISKSSASYLAKLQWDEVQTVIQQVQNVINRCLTIHDKLEASLRDLSRTGDVQACKAVRKTVDASLKELSKELKPLISFLQSSQQATHILPKVEELVAKERDLQERLVAKHTTVVDCYEKKLGGREIENRVASQQQRITTLRQEVDDLLEFIDEI 1203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21030022 21044345 - CmPI595203_08g008770.1 Cmu08g0877 422363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0877 1203 Coils Coil 1172 1192 - -
Cmu08g0877 1203 PANTHER RIBOPHORIN I 600 1056 IPR007676 GO:0006486(InterPro)|GO:0008250(PANTHER)|GO:0016020(InterPro)|GO:0018279(PANTHER)
Cmu08g0877 1203 MobiDBLite consensus disorder prediction 428 472 - -
Cmu08g0877 1203 Pfam Mlo family 14 447 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Cmu08g0877 1203 MobiDBLite consensus disorder prediction 428 442 - -
Cmu08g0877 1203 Pfam Ribophorin I 619 1043 IPR007676 GO:0006486(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2043 Cmu-Chr1:33477988 Cmu08g0877 Cmu-Chr8:21030022 2.00E-158 dispersed
Cmu08g0877 Cmu-Chr8:21030022 Cmu10g0861 Cmu-Chr10:681594 7.70E-144 dispersed
Cmu05g2160 Cmu-Chr5:31094056 Cmu08g0877 Cmu-Chr8:21030022 6.50E-131 transposed
Cmu08g0877 Cmu-Chr8:21030022 Cmu09g1800 Cmu-Chr9:34184670 4.50E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0877 K12666 - csv:101217990 1135.94