Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0879 ATGGGTTGTGACAGAGCCACGGTCACGAGAATGGAAACTAAACAGGGCTCTCCAGAAACTAAACATTCCATGGCTGCACATTTGGGCGAGCTAGTTCTAAATAACGATGTAAAACTCTTTGTGGCTCAGACTGTGGGGTCGTCTTTAATTAATATCATGAGAAGTGGTGATAAGCAGTCAAAAGAAGCTGCATTAAAAGCCTTGAACCAGATATCATCTTTTGAGGCGAGTGCAAGAGTTTTGGTTCAGGAAGGGATACTTCCACCTCTCGTTAAGGATCTTTTCACTGTTGGTTCGAATGTACTTCCCATGAAACTAAAAGAAGTATCTGCAACAATTCTTGCCAATGTTGTGAGCTCAGGCTGTGATTTCAATTCCATTCCAGTGGAACCTAATAATCAGACTACACTTGTCTCTGAAGATACTGTCCATAACCTGCTACAACTCATTAGCAATACCGGTCCAGCCATCGAATGCAAGCTTCTCCAGGTTCTTGTTGGACTTACAAGTTCTCCTTCAAGTATTTCAAGCATTGTTAATGCCATTAGAAGCTCTGGTGCAATTATCAGCTTGGTTCAGTTTATTGAAGCCCCACAGGTGGACTTGCGTGTTTCTGCTATAAAGCTCCTCCAGAACATCTCCCCACACTTAAGCCAGGAGCTAGCAGATGCTCTACGTGGTTCCGTTGGCCAGCTGAGCAGTTTATTTAGAATCATAGCAGAAAATACTGGAATCACAGAAGAACAAGCAGCTGCTGTGGGGCTTCTAGCTGATCTCCCTGAAATGGATTTAGGCCTCTCCAGGCAGATGCTTGATGAAGGAGCTTTTGAGTTGGTCTACCTTAGAATTGTTCAACTCCGCCAAGGGGAGACTAGGGGTGGCCGATTTTTAACACCATTCCTTGAAGGCCTTGTTCGAATTCTTGCGAGGATTACATTTATATTGCCTGCTGAGCCTGATGCTCTTGCATTTTGTCGCATGCATAATCTTGCTGCTTTATTCATCGAACTGCTTCAGTCTAATGGACTTGACAATCTCCAGATGGTTTCAGCCATGGCATTGGGAAACTTATCTCTAGAGTCCAAAAATTTGACTCAGTTGCCTACGCTTCCGGAACCTGGATTTTGTGCCTCAATTTTTCCATGTCTCAGCGCACAACCAGTGCTGACAGGGCTGTGTCCTCTCCACCGGGGTACGTGTTCTTTGAGGGAAAGTTTTTGTCTTTTGGAAGGCAAGGCAGTGGACAAATTGGTAGCCCTTTTAGATCACACGAGTGAGAAGGTCGTTGAGGCAGCACTTGCGGCACTATCTACTTTATTGGACGATGGGGTCGATGTTGAGAAGGGGGTGGACATTTTGCACAGTGTAGGAGGGGTTCAGCCTATATTTGATGTGTTGCTTGAAAACCGTACAGAGAATCTAATGAGAAAGGCCGTTTGGACAGTCGAGAGGCTGTTGCGCACGGACAACATCGCAATGGAATTCTCGAATAATCCAAAGGTAAGTACAGCGCTTGTTGATGCCTTCCAGCATGGTGACAACAAAACCAGGCAAATTGCTGAGCGTGCCTTAAGACATGTTGATAAGTTACCCAACTTCTCCAATATATTCCCTAATCCTAGTAATATGGGATAA 1635 44.83 MGCDRATVTRMETKQGSPETKHSMAAHLGELVLNNDVKLFVAQTVGSSLINIMRSGDKQSKEAALKALNQISSFEASARVLVQEGILPPLVKDLFTVGSNVLPMKLKEVSATILANVVSSGCDFNSIPVEPNNQTTLVSEDTVHNLLQLISNTGPAIECKLLQVLVGLTSSPSSISSIVNAIRSSGAIISLVQFIEAPQVDLRVSAIKLLQNISPHLSQELADALRGSVGQLSSLFRIIAENTGITEEQAAAVGLLADLPEMDLGLSRQMLDEGAFELVYLRIVQLRQGETRGGRFLTPFLEGLVRILARITFILPAEPDALAFCRMHNLAALFIELLQSNGLDNLQMVSAMALGNLSLESKNLTQLPTLPEPGFCASIFPCLSAQPVLTGLCPLHRGTCSLRESFCLLEGKAVDKLVALLDHTSEKVVEAALAALSTLLDDGVDVEKGVDILHSVGGVQPIFDVLLENRTENLMRKAVWTVERLLRTDNIAMEFSNNPKVSTALVDAFQHGDNKTRQIAERALRHVDKLPNFSNIFPNPSNMG 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21054445 21056934 - CmPI595203_08g008790.1 Cmu08g0879 422365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0879 544 Gene3D - 8 292 IPR011989 -
Cmu08g0879 544 SUPERFAMILY ARM repeat 45 527 IPR016024 -
Cmu08g0879 544 Gene3D - 305 535 IPR011989 -
Cmu08g0879 544 MobiDBLite consensus disorder prediction 1 20 - -
Cmu08g0879 544 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 537 IPR052608 -
Cmu08g0879 544 SMART arm_5 400 441 IPR000225 GO:0005515(InterPro)
Cmu08g0879 544 SMART arm_5 34 73 IPR000225 GO:0005515(InterPro)
Cmu08g0879 544 SMART arm_5 74 119 IPR000225 GO:0005515(InterPro)
Cmu08g0879 544 SMART arm_5 175 215 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0879 Cmu-Chr8:21054445 Cmu05g2395 Cmu-Chr5:33169770 1.10E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0879 - - - 0.0