Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0880 ATGTGCTTGGTTTTACCTTCCCCTGCCACGCGTGATCACGATTGGGTCGTAGCCATTGCAGATCGGATGGCAGAGAGTTGGGATGGAAGTTATGATGACTCTGGAAGCATATCAGATGAGAGCAGTTATTATGCGAGACTGCATATTGAACCTATTTATGACTCGTTTTTGTGCCCTTTAACGAAGCAAGTAATGCGGGATCCTGTTACTATAGAGAGTGGGCAAACGTTTGAACGTGCGGCCATTGAAATGTGGTTCAACGAATGCAGGGAAAGTAGAAGGAGACCAATCTGTCCAATGACACTAAAAGAATTAAGAAGCACGGATCTGAATCCCAGTATTGCTCTGCGGAATACTATTGAAGAGTGGACAGCTAGAAATGAAGCTGTTCAGCTGGATATGGCTCGTAAGTCACTTAACTTGGGAAGTCCAGAAAGTGAAACTTTGGGATCTTTGAAGTATGTTCAGCATGTATGCCAAAAGGGTTTGTCAAGGCACATCGCACGAAATGCTGGGTTAATACCTATGATTGTTAGCTTGTTGAAGAGCACCAGTCGAAAGGTCCAGTTTAGAGCTTTGGAAACCCTTAGAATCGTGGCACAAGAAGACAATGAGTGTAAGGAGATGTTAGCTGAAGGTGACACTCTTCACACAGTAGTAAAGTTCTTGCGTCATGAGCGTTCGAGGGAGAAGGAGGAAGCTGTAGCTTTGCTGTATGAGCTTTCCAAGTCCGAAGCCTTGTGTGAAGAGATTGGTTCAGTTAATGGGGCTATTCTTATATTAGTTGGAATGTCGAGTAGCAAATCTGAGAACATCACCACAGTTGAAAATGCTGATAGAACATTAGAAAACCTGGAGAAGTGTGAGAATAACATTCGGCAAATGGCTCAATATGGTAGACTGAGGCCTCTTCTGACACAGATTCTTGAAGGCATGATTAAATAA 945 43.39 MCLVLPSPATRDHDWVVAIADRMAESWDGSYDDSGSISDESSYYARLHIEPIYDSFLCPLTKQVMRDPVTIESGQTFERAAIEMWFNECRESRRRPICPMTLKELRSTDLNPSIALRNTIEEWTARNEAVQLDMARKSLNLGSPESETLGSLKYVQHVCQKGLSRHIARNAGLIPMIVSLLKSTSRKVQFRALETLRIVAQEDNECKEMLAEGDTLHTVVKFLRHERSREKEEAVALLYELSKSEALCEEIGSVNGAILILVGMSSSKSENITTVENADRTLENLEKCENNIRQMAQYGRLRPLLTQILEGMIK 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21056967 21064165 - CmPI595203_08g008800.1 Cmu08g0880 422366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0880 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 128 IPR013083 -
Cmu08g0880 314 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 34 311 IPR052608 -
Cmu08g0880 314 SUPERFAMILY ARM repeat 132 306 IPR016024 -
Cmu08g0880 314 Coils Coil 275 295 - -
Cmu08g0880 314 SMART Ubox_2 55 123 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu08g0880 314 CDD RING-Ubox_PUB 53 110 IPR045210 -
Cmu08g0880 314 Gene3D - 129 311 IPR011989 -
Cmu08g0880 314 SUPERFAMILY RING/U-box 40 133 - -
Cmu08g0880 314 Pfam U-box domain 54 128 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu08g0880 314 ProSiteProfiles U-box domain profile. 51 130 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu08g0880 314 SMART arm_5 203 243 IPR000225 GO:0005515(InterPro)
Cmu08g0880 314 SMART arm_5 161 201 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0880 Cmu-Chr8:21056967 Cmu10g2558 Cmu-Chr10:32371144 8.20E-13 dispersed
Cmu08g0880 Cmu-Chr8:21056967 Cmu05g2395 Cmu-Chr5:33169770 2.00E-43 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0880 - - - 0.0