Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0886 ATGAAGGACGACGCTGAGTTTCATAAAACGGTTTCCTCCGCCTCCCGAAATGGAAACTCCCTAGTGGCATGTCTCATTTTGGACGCCGCGTTCCTCGCTGCAGATGGGAGCCGGGTCGAGTCTGACAGTCGTGTTCGATTTGAATCCCGGCATTCTGTTAATTCCTCAGGTACATGGATGGGAAAAGAAGGTGAGAGCAACAGGGAAAGTTGTCCGAAGGGGAGCGCAGCTGCTCGTAGTTTTACGTTCCGTGAACTCGCAATGGCTACAAGAGGTTTCAAGGAAGTAAATTTGCTTGGGGAGGGTGGTTTTGGACGTGTTTACAAAGGACGTTTGGAATCCGGACAGATTGTTGCAGTTAAACAGCTTAATCGTGATGGGCTTCAAGGCTTTCAAGAATTCATTGTGGAGGTTCTCATGTTGAGTCTGTTGCACCATCCCAATCTCGTTACCTTGATTGGTTACTGTACTGATGGAGATCAAAGGCTTTTGGTTTATGAGTACATGCCTATGGGAAGCCTGGAAGATCATCTGTTTGATTTGGGTACTGACAAAAAGCCACTGAGTTGGAATACAAGGATGAAGATTGCAGTCGCTGCTGCCCGAGGTCTCGAGTATCTCCACTGTAAAGCAAATCCCCCAGTCATATATCGTGACTTGAAATCAGCTAATATCTTACTGGACAATGACTTCAATCCTAAGCTTTCAGATTTCGGATTAGCTAAACTGGGACCTGTTGGTGACAATACTCATGTTTCAACTAGAGTAATGGGAACGTATGGATATTGTGCTCCAGAGTACGCCATGAGTGGTAAATTAACCCTTAAATCTGATATTTACAGCTTTGGTGTGGTTCTGCTTGAGCTTATTACGGGGCGCAAGGTAATTGATACAAAAAGGAGACCAGGAGAGCAGAACTTAGTTGCTTGGTCCCGTCCTATACTTAAGGACCGGAGAAAGTTTGCGGAATTAGTTGATCCCCTGTTGGAAGGACACTTCCCTCTTCGTTGTTTGCAACATGCAGTTGCAATTACTGCAATGTGTCTACAGGAACAACCATCATTTCGCCCTCTTATAAGTGATATTGTTGTAGCACTCGAGTATTTGGCCTCTCAAAGTCATTTACAAGAACTACGCAATGGTAGGATTCACAATTCATCACAATCATCACCCTCACAACAGAATGACACCCATGCCCAGGAATCAGATCCCTGA 1215 45.19 MKDDAEFHKTVSSASRNGNSLVACLILDAAFLAADGSRVESDSRVRFESRHSVNSSGTWMGKEGESNRESCPKGSAAARSFTFRELAMATRGFKEVNLLGEGGFGRVYKGRLESGQIVAVKQLNRDGLQGFQEFIVEVLMLSLLHHPNLVTLIGYCTDGDQRLLVYEYMPMGSLEDHLFDLGTDKKPLSWNTRMKIAVAAARGLEYLHCKANPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKVIDTKRRPGEQNLVAWSRPILKDRRKFAELVDPLLEGHFPLRCLQHAVAITAMCLQEQPSFRPLISDIVVALEYLASQSHLQELRNGRIHNSSQSSPSQQNDTHAQESDP 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21118481 21122619 + CmPI595203_08g008860.1 Cmu08g0886 422372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0886 404 CDD STKc_IRAK 99 367 - -
Cmu08g0886 404 Gene3D Transferase(Phosphotransferase) domain 1 169 391 - -
Cmu08g0886 404 Gene3D Phosphorylase Kinase; domain 1 64 168 - -
Cmu08g0886 404 MobiDBLite consensus disorder prediction 54 73 - -
Cmu08g0886 404 FunFam Serine/threonine-protein kinase PBS1 169 384 - -
Cmu08g0886 404 ProSitePatterns Protein kinases ATP-binding region signature. 99 121 IPR017441 GO:0005524(InterPro)
Cmu08g0886 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu08g0886 404 SUPERFAMILY Protein kinase-like (PK-like) 74 367 IPR011009 -
Cmu08g0886 404 SMART serkin_6 93 369 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g0886 404 ProSiteProfiles Protein kinase domain profile. 93 369 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g0886 404 MobiDBLite consensus disorder prediction 383 404 - -
Cmu08g0886 404 Pfam Protein kinase domain 94 363 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g0886 404 PANTHER OS07G0668900 PROTEIN 57 394 - -
Cmu08g0886 404 FunFam probable serine/threonine-protein kinase RLCKVII 64 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0886 Cmu-Chr8:21118481 Cmu11g1861 Cmu-Chr11:30763322 5.20E-153 dispersed
Cmu08g0886 Cmu-Chr8:21118481 Cmu08g0887 Cmu-Chr8:21125094 8.90E-31 tandem
Cmu11g1831 Cmu-Chr11:30481069 Cmu08g0886 Cmu-Chr8:21118481 3.80E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75724 PF00069 Pkinase 4.30E-48 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0886 - - - 0.0