Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0935 ATGGACGGCGGTGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTAATTAAGGCTCTAACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTTTGCCTTTATGGATTTCCTAGCGAGCAGTGGGAAGTCAATCTACCTGCGGAAGAGGTGCCTCCGGAGCTTCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGATGGGATGCAAGAAAAGGACTGGCTATCTTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTCTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCCGAACCTCAAATAAAAAATACAAAAGCTGTTCAATCGAAGGACGAGGACGAGGAAGGCTTGGAAGAGGAAGATGAGGAAGAACATGGAGAAACACTTTGTGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTTTGGATTTGCTGTGACATATGCGAGAAATGGTTCCATGGGAACACGTGTGGATACCTTTCTCTATTGTTCGGGATGTTCGGGTCATGGGTGCAACAAGGAGAGATTTGGTTCGTTTGTGCGGTTTCGTTATGCGTTGAAGTCAAGTGGATAAGAGTGCTTTCAAAGGCAAGAAGAGCGGCGCGCATCTCATATCGGCCGAGGTTGTCTTCGGCCATGGTGGCTATGGCTGTCCATGGTGGTGGTTTTTGGCAGTGGGCGGTGCTTGTCGGCGGCAGACATGGTGAAAGTGAAGGTGGAGAAATTTAG 942 45.12 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGNTCGYLSLLFGMFGSWVQQGEIWFVCAVSLCVEVKWIRVLSKARRAARISYRPRLSSAMVAMAVHGGGFWQWAVLVGGRHGESEGGEI 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21711968 21718700 + CmPI595203_08g009350.1 Cmu08g0935 422421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0935 313 PANTHER CPG BINDING PROTEIN 8 227 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cmu08g0935 313 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cmu08g0935 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 231 IPR013083 -
Cmu08g0935 313 MobiDBLite consensus disorder prediction 145 193 - -
Cmu08g0935 313 MobiDBLite consensus disorder prediction 145 174 - -
Cmu08g0935 313 SUPERFAMILY FYVE/PHD zinc finger 171 226 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0935 Cmu-Chr8:21711968 Cmu09g0082 Cmu-Chr9:1019680 2.00E-96 dispersed
Cmu08g0935 Cmu-Chr8:21711968 Cmu11g0156 Cmu-Chr11:2049808 1.80E-108 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0935 K26274 - csv:101208889 404.445