Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0943 ATGGAGGAAATGTCCCCCGCGGTTGTGGTGCCATTTAGGTTAGGTAATTCAGTCTGTGATAACCCCAACATGGCAACTCCCATGGATATCACAAGACTTAAGCTAATGGCAGATACTGCTGGTTTGTTATCTGATTCTGTGACTAAGGCTTCTGATGACCTGATTGAAGTAGGTTCTGATGATTGTAAGAGTTCTAATGGGGAGGAAGAGGTTGGTATCACTAAAGTTTCGGGTATGAATGACAAGTGTGAAGGAGTTCCATTGTCAGTTGTGTTATCTCAAAATAATAGCAGTTGGGTTCCGGCAGATGAGTCAATATCCCATGGAAGTGAGGAAGATGATTCTTTATCTCTAGAGGGCGATCACATTTATGATAGCTCTTGTTCACATTCAGTGATTAGTGAGAATAGCAGCATTTGTGGTGATGATTTTTTAGGTTCTGAGGTGTCTTCTTTTGAAGCATTTGATTCCATCAGCAATCCAAAGGACATTAGCAGCGTTGAGATTGCAGCTAAAGCCAATATTGAAGAGACTAATGTTGAAAGTCTTGACTCTCAGATTGCGAGTTCTTCTTCTGCAGCAGCTAGCCTTGAAGAAGATGTTGGAGATGGGCTAGGCACTGAAGCATGTAATAACACGGTTCTTCAGCTGCCTCTTGAGAAAAAGGCAAGCGAACCAGTCAGTCGAAGTGTTTTTGAGGTAGATTGTGTTCCCCTTTGGGGATTTACATCGGTTTGTGGAAGAAGACCCGAGATGGAAGATGCAGTGGCAACTGTACCTAGGTTTTCAGAACTTCCTGTCCAAATGCTTGTTGGCGACCGAGTTCTTGATGGCTCAAACAAGGCTATAGCTCACCAAACCGTTCATTTTTTTGGGGTTTATGATGGTCATGGTGGCTCTCAGGTTGCAAATTTTTGTCGTGAACGTATGCATTTGGCTTTATCTGAGGAGATAGAACTTGCTAAGCAAGAAATAGCCGTTGGCAATGTTAAGGATAATTGCCAAGAGCTATGGAGAAAGGCATTCACCAACTGTTTTCTTAAAGTTGATGCTGAAATTGGAGGGGGACCTGGTCTTGAGCCTGTTGCGCCAGAAACTGTAGGCTCCACTGCTGTTGTTGCAATTATCTGTGCCTCTCACATTATTGTTGCAAACTGTGGAGACTCAAGAGCAGTTCTTTGTCGTGGGAAAGAGCCAATGGCATTGTCTGTGGATCATAAACCAAACAGAGAAGACGAATATGAAAGGATTGAGGCTGCAGGAGGAAAGGTCATACAGTGGAACGGGCATCGTGTTTTTGGTGTTCTTGCAATGTCGAGATCCATTGGTGATAGATACTTGAAACCATGGATCATCCCAGAGCCAGAAGTGATGTTCCTCCCTCGGGCAAAAGACGACGAATGCCTCGTTCTAGCGAGTGATGGTTTATGGGATGTGATGACCAATGAAGAGGTATGCGACCTGGCTCGAAGACGAATCCTACTTTGGCACAAGAAGAATGGCGTTAGTTTGCCTTCTGAGAGGGGGGTGGGGATCGATCCCGCAGCACAAGCAGCCGCAGAATACCTCTCAAACCGAGCTCTTCAAAAGGGCAGCAAAGACAACATTACGATATATTCTTATATAAACACATATTTGCCTAGGTTTTTGAGGCGCGAGGACAAGAAGCGACTTCGTTGGCCGAGAAATTTATTTCCAAGAACCGCCTCGTCGTTCAGGCCGCTGTTGCTTCGCCGACGGCCATTTGATGGAGTGGTAATATCTCAATCAATGGGAATCAAGAGAGAGAGTAAAAGCTCCGCTTCTGCAACATCGCCGTGTGCTGATTTCAGGGCTGCATATCACAATTGTTTCAATCGATGGTACTCGGAGAAGTTTGTAAAAGGTCATTGGGATGAAGAACCCTGCGTCTCCGAGTGGCAGAAGTACAGAGCTTGCCTCTCTGAGCATTTGGATGATAAGAAGTTGAAGCGTTTCTTGGAAGAGGAAACGATTGTTCATTCTTCCATGAAAGCTGATGGGAGTCAAGAATCAAGATAG 2040 44.85 MEEMSPAVVVPFRLGNSVCDNPNMATPMDITRLKLMADTAGLLSDSVTKASDDLIEVGSDDCKSSNGEEEVGITKVSGMNDKCEGVPLSVVLSQNNSSWVPADESISHGSEEDDSLSLEGDHIYDSSCSHSVISENSSICGDDFLGSEVSSFEAFDSISNPKDISSVEIAAKANIEETNVESLDSQIASSSSAAASLEEDVGDGLGTEACNNTVLQLPLEKKASEPVSRSVFEVDCVPLWGFTSVCGRRPEMEDAVATVPRFSELPVQMLVGDRVLDGSNKAIAHQTVHFFGVYDGHGGSQVANFCRERMHLALSEEIELAKQEIAVGNVKDNCQELWRKAFTNCFLKVDAEIGGGPGLEPVAPETVGSTAVVAIICASHIIVANCGDSRAVLCRGKEPMALSVDHKPNREDEYERIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMFLPRAKDDECLVLASDGLWDVMTNEEVCDLARRRILLWHKKNGVSLPSERGVGIDPAAQAAAEYLSNRALQKGSKDNITIYSYINTYLPRFLRREDKKRLRWPRNLFPRTASSFRPLLLRRRPFDGVVISQSMGIKRESKSSASATSPCADFRAAYHNCFNRWYSEKFVKGHWDEEPCVSEWQKYRACLSEHLDDKKLKRFLEEETIVHSSMKADGSQESR 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21761824 21766461 - CmPI595203_08g009430.1 Cmu08g0943 422429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0943 679 Gene3D - 226 541 IPR036457 -
Cmu08g0943 679 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 604 654 - -
Cmu08g0943 679 ProSiteProfiles PPM-type phosphatase domain profile. 239 543 IPR001932 -
Cmu08g0943 679 SMART PP2C_4 229 541 IPR001932 -
Cmu08g0943 679 Pfam Uncharacterised protein family (UPF0203) 602 663 IPR007918 -
Cmu08g0943 679 CDD PP2Cc 241 538 IPR001932 -
Cmu08g0943 679 ProSitePatterns PPM-type phosphatase domain signature. 290 298 IPR000222 GO:0043169(InterPro)
Cmu08g0943 679 FunFam Protein phosphatase 2C 16 227 543 - -
Cmu08g0943 679 Pfam Protein phosphatase 2C 262 536 IPR001932 -
Cmu08g0943 679 PANTHER PROTEIN PHOSPHATASE 195 538 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0009788(PANTHER)|GO:0035970(PANTHER)
Cmu08g0943 679 SUPERFAMILY PP2C-like 234 538 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0112 Cmu-Chr7:936068 Cmu08g0943 Cmu-Chr8:21761824 7.80E-18 dispersed
Cmu07g1365 Cmu-Chr7:28946691 Cmu08g0943 Cmu-Chr8:21761824 5.90E-144 dispersed
Cmu08g0943 Cmu-Chr8:21761824 Cmu11g0672 Cmu-Chr11:7393816 3.80E-47 dispersed
Cmu08g0943 Cmu-Chr8:21761824 Cmu03g0742 Cmu-Chr3:1593010 1.20E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0943 K14497 - csv:101207918 1001.12